CK932978

Overview
NameCK932978
Unique NameCK932978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932978_ssr142 microsatellite CK932978_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:13..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_CAMJD (Transaldolase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=tal PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 58/139 (41.73%), Postives = 83/139 (59.71%), Query Frame = 2
Query:  383 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            + L L++  + G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK L+  + + NV IKIPAT      + E++  GISVN TLIFS
Sbjct:   19 EFLNLLSHEINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENVMIKIPATKASYEVMYELMKNGISVNATLIFS 153          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_HELPY (Transaldolase OS=Helicobacter pylori GN=tal PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  347 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VNVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAAKSIDEAKRLFKTLNRPNVMIKVPASESGIEVVSALTQASIPVNVTLVFS 155          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_HELP2 (Transaldolase OS=Helicobacter pylori (strain P12) GN=tal PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  347 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E N  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKNPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASTSGFEVISALAQASIPINVTLVFS 155          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_HELPJ (Transaldolase OS=Helicobacter pylori J99 GN=tal PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  347 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESAFEVISALAQASIPINVTLVFS 155          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_HELPH (Transaldolase OS=Helicobacter pylori (strain HPAG1) GN=tal PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  347 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  I  +    I +NVTL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESGLEVISALAQASIPINVTLVFS 155          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_HELPS (Transaldolase OS=Helicobacter pylori (strain Shi470) GN=tal PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.164e-19
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  347 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VN TL+FS
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAPKSIDEAKRLFKTLNRPNVMIKVPASESGLEVVSALTKASIPVNATLVFS 155          
The following BLAST results are available for this feature:
BLAST of CK932978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_CAMJD3.861e-2141.73Transaldolase OS=Campylobacter jejuni subsp. doyle... [more]
TAL_HELPY1.242e-1938.96Transaldolase OS=Helicobacter pylori GN=tal PE=3 S... [more]
TAL_HELP21.242e-1939.61Transaldolase OS=Helicobacter pylori (strain P12) ... [more]
TAL_HELPJ2.767e-1938.96Transaldolase OS=Helicobacter pylori J99 GN=tal PE... [more]
TAL_HELPH3.614e-1938.96Transaldolase OS=Helicobacter pylori (strain HPAG1... [more]
TAL_HELPS6.164e-1938.31Transaldolase OS=Helicobacter pylori (strain Shi47... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932978 ID=CK932978; Name=CK932978; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTATCGTACTCCGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTG
AGTTTTTAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAG
CTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATC
ATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCA
ATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTG
AAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAG
TGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCC
CTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATT
GCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGC
AATATCTTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAAT
CTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATT
CAAGATGCATGCAAACACTTTGAGTCAATCTATGATGAAACCAATGGCGG
TGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCC
AAGGGACTGTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCC
AATGTATACATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAA
GGAAGTTATTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCC
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