CK932980

Overview
NameCK932980
Unique NameCK932980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932980 vs. ExPASy Swiss-Prot
Match: PALA_DEBHA (pH-response regulator protein palA/RIM20 OS=Debaryomyces hansenii GN=RIM20 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 64/297 (21.55%), Postives = 125/297 (42.09%), Query Frame = 1
Query:   46 ATEDAQFRSQFGT-RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSIL--DRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTS----------------AGSYEDLFRKEISKYDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIF----NLEDYKASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREM----------IEGVQRQMAGLNFQDRKTSGSYD 837
            A ED   R + G+ RW RP+SS  +    +++N+    L QA E D  I     +    + +     + +   +P      + LD   + I+  L++ + ++  +  QR      ++   R ++ILP ++ S                  S+ED++ K I+ ++               L   I   N+EF + +    N   YK  R++  + ++    KY E+  N+NEG KFY        ++ ++C ++V  R ++ RE+          +E V  Q +  +F  +   G+++
Sbjct:  466 ADEDDIMRERQGSQRWARPKSSEASSEFINKINKMEQYLDQAKEGDQFIISQYHEIEPYLQLYCGGYKELIQFIPNST--YVKLDTKINEIIIKLRELINEVSRIENQRKQFLTRIEIKARNNNILPSIIDSFKKKQRKLYEENAAIDERSFEDVYAKHITMFNSDLRFLEDSKHAQIALEGNIDDLNQEFESEYQHTNNESQYK--RQEVLQTLENVYTKYLELISNLNEGSKFYSDFIIKSNSVLKECDEYVYHRRVEGRELEMFLNNQAVPVESVGSQQSAPDFPPQPMGGTWN 758          
BLAST of CK932980 vs. ExPASy Swiss-Prot
Match: PALA_CANAL (pH-response regulator protein palA/RIM20 OS=Candida albicans GN=RIM20 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 55/261 (21.07%), Postives = 108/261 (41.38%), Query Frame = 1
Query:   52 EDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDR--RPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS----------------YEDLFRKEISKYDHICXXXXXXXXXXXXLLMQIQAQNE----EFSAIFNLEDYKASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREM 768
            +D   R Q  TRWTR  +    + L  ++++    L QA   D  + +   D    + +     + +   +P      + L      ++  L+  L +  TL ++R      L+   R + ILPKL+T   S                +E ++ K +  +D               L  +I + N+    EF ++ N  + K  R++  + ++ A  K+ EI  N+ EG KFY    +  + + Q+C +++  R ++ R++
Sbjct:  477 DDMLRRKQGSTRWTRKSTDDAAQELIKKVDKMKQYLLQANNGDGFVLKKFYDIKPALDVYSSGYKALSQYIPN--SQYIELPEQLSIVISDLRSCLARANTLESERKEFLQTLEIRSRDNSILPKLITEYNSNRSKYQTENGEFNFNAFESVYEKHMKLFDSDIKYIARTRDSQMTLEHEIDSINQKFVQEFKSLQNSSNEK--RQQVLQYLETAYEKFLEIINNLTEGSKFYTDFIEKGSAVLQECEEYLYRRRVESRDL 733          
The following BLAST results are available for this feature:
BLAST of CK932980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PALA_DEBHA1.404e-1121.55pH-response regulator protein palA/RIM20 OS=Debary... [more]
PALA_CANAL6.968e-1121.07pH-response regulator protein palA/RIM20 OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932980 ID=CK932980; Name=CK932980; organism=Citrus sinensis; type=EST; length=863bp
GGGCAGGAATTGCTGGTGTAGACTGAGGAACTTTTGCAGAAAGAAGCAAC
AGAAGATGCTCAATTCAGAAGCCAATTTGGAACTCGATGGACTAGGCCAC
AGTCCAGCACTCTAACAAAGAACTTGCAAGATAGGTTAAATAGATTTGCT
GGAAACTTAAAGCAAGCCGCCGAAAGTGATGCCCGAATTGAGCGTTCAGT
GAGAGATCATTCTGCACTCATGTCAATCCTTGATCGCCGTCCCATAGAAT
CGGCCCTTCCTACTTTGGCTAGGCCAATAATGTCTTTGGATGCCACTGAG
GATGCTATTGTTGGGGCTCTGAAGCAAAGCTTGAGGCAATTGGAGACTCT
TGGTGCTCAAAGGGCAGGTCTTGAAGACATGCTCAAAGAGATGAAAAGAA
AGGATGACATTCTACCAAAGTTGATGACCTCTGCTGGATCATATGAGGAT
CTCTTCAGGAAGGAGATATCAAAATATGATCACATTTGTGAAGAAATTGC
CCAAAATATCGAGGCACAGGAACAATTGCTGATGCAAATTCAGGCTCAAA
ATGAAGAGTTCTCTGCCATCTTTAATCTTGAAGACTATAAAGCATCTCGA
GAGAAGTGTTATAAGCAAATTCAAGCTGCCATAGCTAAGTATCGAGAAAT
TAAAGAAAACATTAATGAGGGATTGAAGTTTTATGTTACTCTTCAGGATG
CAATCACAAATATCAAGCAGCAATGCAGTGACTTTGTGATGACTAGAAAC
ATCCAGTGCCGAGAAATGATTGAAGGTGTACAGAGACAGATGGCAGGTCT
TAATTTTCAGGATCGTAAAACCTCAGGTTCGTATGATGGCAGCTATCCTA
CAGTTGGACAACC
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