CK932985
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.467e-25 Identity = 58/156 (37.18%), Postives = 98/156 (62.82%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGC-----ELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 G+ E+G +G+ VN+P++ G + D +Y+ A++ VV P+ + F PDF ++SAGFDA G + LG ++TP + MT L + + GK+++ LEGGYNL SIS++A ++ L+GE+ + ++ P++S L T+ +V+ I FWP+L Sbjct: 702 GSVTEIGKGAGKGFSVNIPFSGGVMKDAEYLAAWRTVVEPVLASFCPDFILVSAGFDACHGHVNALGGYEITPEMFGYMTKCLLSYANGKVVLALEGGYNLDSISAAAEQCVQALIGESDDAGRLCTDSLENLPNQSALETLQKVIAIHKGFWPAL 857
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24 Identity = 60/156 (38.46%), Postives = 96/156 (61.54%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDP--LGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENP-----GCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 G+ EVG + A+G VNVP++ + D +Y+ A++ V+ P+ + F PDF I+SAGFDA G P LG +VTP + MT L + GK+++ LEGGY+L+SIS +A ++ L+GE+ +S P+ S + T+ +V+ I ++WP+L Sbjct: 629 GSVTEVGKNDAKGLTVNVPFSGDVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFDACHGHPNALGGYEVTPEMFGYMTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQALIGESDDAGRLSSVALESLPNPSAVETLQKVIAIHKSYWPAL 784
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22 Identity = 63/163 (38.65%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGD--PLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCELG-DSAPSKSGLVTVLEVLKIQMNFW---PSLASC 456 GA +EVG EG+ VNV W G +GD +Y+ AF+ VV+PIA EF PD ++SAGFDAA G PLG V+ + MT L L+GG +++ LEGG++L +I ++ + + LLG +P E G P+ + + ++ V+++ +W LASC Sbjct: 742 GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRLASC 904
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGD--PLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENP---GCELGDSAPSKSGLVTVLEVLKIQMNFW---PSLASC 456 GA +EVG EG+ VNV W G +GD +Y+ AF+ VV+PIA EF PD ++SAGFDAA G PLG V+ + MT L L+GG +++ LEGG++L +I ++ + + LLG E P+ S + ++ V+++ +W LASC Sbjct: 729 GAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQKPNLSAIRSLEAVVRVHRKYWGCMQRLASC 891
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21 Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQ-SLWEIYAAE 498 GA EVG GY VNV W G +GD +Y+ AF+ VV+PIA EF PD ++SAGFDA G PLG VT + +T L L+GG++++ LEGG++L +I ++ + + LL P E + PS + + T+ +V++IQ W + T L SL E A E Sbjct: 894 GAPEEVGGGPGMGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSINAVATLEKVIEIQSKHWSCVQRFATGLGCSLQEAQAGE 1068
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 2.996e-21 Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLVTVLEVLKIQ 426 GA NEVG EGY +N+ W G +GD +Y+ AF+ +V P+A EFDPD ++SAGFDA G PLG VT + +T L L+ G++++ LEGG++L +I ++ + + LLG E ++ +P+ + ++++ ++++IQ Sbjct: 855 GAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALLGNELEPLAEDILHQSPNMNAVISLQKIIEIQ 1004
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21 Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFW 438 GA EVG GY VNV W G +GD +Y+ AF+ VV+PIA EF PD ++SAGFDA G PLG VT + +T L L+GG++++ LEGG++L +I ++ + + LL P E + PS + + T+ +V++IQ W Sbjct: 896 GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVATLEKVIEIQSKHW 1049
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.718e-21 Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTEL-QSLWEIYAAE 498 GA EVG GY VNV W G +GD +Y+ AF+ VV+PIA EF PD ++SAGFDA G PLG VT + +T L L+GG++++ LEGG++L +I ++ + + LL P E + P+ + + T+ +V++IQ W + L +SL E A E Sbjct: 905 GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGE 1079
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20 Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTEL-QSLWEIYAAE 498 GA EVG GY VNV W G +GD +Y+ AF+ VV+PIA EF PD ++SAGFDA G PLG VT + +T L L+GG++++ LEGG++L +I ++ + + LL P E + P+ + + T+ +V++IQ W + L +SL E A E Sbjct: 905 GAPEEVGGGPGVGYNVNVAWIGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGE 1079
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.327e-20 Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 7 ANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILE 282 A+ VG +G+ VN+PWN+ G+G+ DY+ AF +V+LP+A EFDP+ ++SAGFD+A GDP G TP +A +T +L L+GG++ +LE Sbjct: 211 ADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLE 302 The following BLAST results are available for this feature:
BLAST of CK932985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932985 ID=CK932985; Name=CK932985; organism=Citrus sinensis; type=EST; length=529bpback to top |