CK932985

Overview
NameCK932985
Unique NameCK932985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1511 contig Csv1_Contig1511:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.467e-25
Identity = 58/156 (37.18%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGC-----ELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            G+  E+G    +G+ VN+P++ G + D +Y+ A++ VV P+ + F PDF ++SAGFDA  G  + LG  ++TP  +  MT  L + + GK+++ LEGGYNL SIS++A   ++ L+GE+        +  ++ P++S L T+ +V+ I   FWP+L
Sbjct:  702 GSVTEIGKGAGKGFSVNIPFSGGVMKDAEYLAAWRTVVEPVLASFCPDFILVSAGFDACHGHVNALGGYEITPEMFGYMTKCLLSYANGKVVLALEGGYNLDSISAAAEQCVQALIGESDDAGRLCTDSLENLPNQSALETLQKVIAIHKGFWPAL 857          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24
Identity = 60/156 (38.46%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDP--LGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENP-----GCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            G+  EVG + A+G  VNVP++   + D +Y+ A++ V+ P+ + F PDF I+SAGFDA  G P  LG  +VTP  +  MT  L   + GK+++ LEGGY+L+SIS +A   ++ L+GE+           +S P+ S + T+ +V+ I  ++WP+L
Sbjct:  629 GSVTEVGKNDAKGLTVNVPFSGDVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFDACHGHPNALGGYEVTPEMFGYMTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQALIGESDDAGRLSSVALESLPNPSAVETLQKVIAIHKSYWPAL 784          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22
Identity = 63/163 (38.65%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGD--PLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCELG-DSAPSKSGLVTVLEVLKIQMNFW---PSLASC 456
            GA +EVG    EG+ VNV W  G    +GD +Y+ AF+ VV+PIA EF PD  ++SAGFDAA G   PLG   V+   +  MT  L  L+GG +++ LEGG++L +I  ++ + +  LLG   +P  E G    P+ + + ++  V+++   +W     LASC
Sbjct:  742 GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRLASC 904          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGD--PLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENP---GCELGDSAPSKSGLVTVLEVLKIQMNFW---PSLASC 456
            GA +EVG    EG+ VNV W  G    +GD +Y+ AF+ VV+PIA EF PD  ++SAGFDAA G   PLG   V+   +  MT  L  L+GG +++ LEGG++L +I  ++ + +  LLG        E     P+ S + ++  V+++   +W     LASC
Sbjct:  729 GAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQKPNLSAIRSLEAVVRVHRKYWGCMQRLASC 891          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21
Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQ-SLWEIYAAE 498
            GA  EVG     GY VNV W  G    +GD +Y+ AF+ VV+PIA EF PD  ++SAGFDA  G   PLG   VT   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LL     P  E +    PS + + T+ +V++IQ   W  +    T L  SL E  A E
Sbjct:  894 GAPEEVGGGPGMGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSINAVATLEKVIEIQSKHWSCVQRFATGLGCSLQEAQAGE 1068          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.996e-21
Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLVTVLEVLKIQ 426
            GA NEVG    EGY +N+ W  G    +GD +Y+ AF+ +V P+A EFDPD  ++SAGFDA  G   PLG   VT   +  +T  L  L+ G++++ LEGG++L +I  ++ + +  LLG   E    ++   +P+ + ++++ ++++IQ
Sbjct:  855 GAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALLGNELEPLAEDILHQSPNMNAVISLQKIIEIQ 1004          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFW 438
            GA  EVG     GY VNV W  G    +GD +Y+ AF+ VV+PIA EF PD  ++SAGFDA  G   PLG   VT   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LL     P  E +    PS + + T+ +V++IQ   W
Sbjct:  896 GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVATLEKVIEIQSKHW 1049          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.718e-21
Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTEL-QSLWEIYAAE 498
            GA  EVG     GY VNV W  G    +GD +Y+ AF+ VV+PIA EF PD  ++SAGFDA  G   PLG   VT   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LL     P  E +    P+ + + T+ +V++IQ   W  +      L +SL E  A E
Sbjct:  905 GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGE 1079          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 65/175 (37.14%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTEL-QSLWEIYAAE 498
            GA  EVG     GY VNV W  G    +GD +Y+ AF+ VV+PIA EF PD  ++SAGFDA  G   PLG   VT   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LL     P  E +    P+ + + T+ +V++IQ   W  +      L +SL E  A E
Sbjct:  905 GAPEEVGGGPGVGYNVNVAWIGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVIEIQSKHWSCVQKFAAGLGRSLREAQAGE 1079          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.327e-20
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    7 ANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILE 282
            A+ VG    +G+ VN+PWN+ G+G+ DY+ AF +V+LP+A EFDP+  ++SAGFD+A GDP G    TP  +A +T +L  L+GG++  +LE
Sbjct:  211 ADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLE 302          
The following BLAST results are available for this feature:
BLAST of CK932985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
HDA4_CAEBR4.467e-2537.18Histone deacetylase 4 OS=Caenorhabditis briggsae G... [more]
HDA4_CAEEL3.782e-2438.46Histone deacetylase 4 OS=Caenorhabditis elegans GN... [more]
HDAC7_HUMAN6.037e-2238.65Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=... [more]
HDAC7_MOUSE2.294e-2138.04Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=... [more]
HDAC5_CRIGR2.294e-2138.29Histone deacetylase 5 OS=Cricetulus griseus GN=HDA... [more]
HDAC9_HUMAN2.996e-2136.00Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=... [more]
HDAC5_MOUSE3.913e-2138.96Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=... [more]
HDAC5_HUMAN8.718e-2137.14Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=... [more]
HDAC5_PONAB1.942e-2037.14Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=... [more]
HDA10_RAT4.327e-2046.74Histone deacetylase 10 OS=Rattus norvegicus GN=Hda... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932985 ID=CK932985; Name=CK932985; organism=Citrus sinensis; type=EST; length=529bp
GGGGCTGCGAATGAGGTTGGTATTGATGGTGCAGAAGGATATTGTGTAAA
TGTTCCGTGGAATCGTGGTGGAGTTGGAGATAATGATTATGTTTTTGCAT
TTCAGAATGTTGTTCTTCCCATAGCTTCGGAGTTTGATCCTGATTTCACT
ATCATATCAGCTGGATTTGATGCCGCAAGGGGTGATCCTTTAGGCTGCTG
TGATGTAACTCCTGCTGGATATGCACAGATGACACACATGCTGAATGCTC
TCTCCGGTGGCAAGTTGCTTGTTATACTCGAGGGCGGCTACAACCTCCGT
TCAATATCCTCTTCTGCTACTTCAGTGATTAAGGTATTGCTGGGTGAAAA
TCCTGGATGCGAATTAGGTGACTCTGCTCCTTCCAAATCTGGCCTGGTAA
CTGTTCTTGAAGTATTGAAGATTCAGATGAACTTCTGGCCTTCTCTAGCA
TCCTGCTTTACAGAATTGCAGTCACTATGGGAAATATACGCTGCTGAAAA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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