CK932985
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19 Identity = 60/176 (34.09%), Postives = 102/176 (57.95%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSL-ASCFTELQSLWEIYAAEN 501 GA +EVG G+ VN+ + G +GD +Y+ AF+ VV+PIASEF PD ++S+GFDA G PLG +++ + +T L L+GG++++ LEGG++L +I ++ + + LLG +P E + P+ + + ++ +V++I +W L + T +SL E EN Sbjct: 875 GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCEN 1050
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18 Identity = 56/162 (34.57%), Postives = 94/162 (58.02%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSK--------SGLVTVLEVLKIQMNFWPSL 447 GA +EVG G+ VN+ + G +GD +Y+ AF+ VV+PIA+EF PD ++S+GFDA G PLG +++ + +T L L+GG++++ LEGG++L +I ++ + + LLG EL D P K + + ++ +V++I +W SL Sbjct: 871 GAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGN----EL-DPLPEKVLQQRANANAVHSMEKVIEIHSKYWHSL 1027
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18 Identity = 53/157 (33.76%), Postives = 92/157 (58.60%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 GA +EVG G+ VN+ + G +GD +Y+ AF+ VV+PIA+EF PD ++S+GFDA G PLG +++ + +T L L+GG+L++ LEGG++L +I ++ + + LLG E ++ P+ + + ++ +V+ I +W L Sbjct: 867 GAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRLVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVHSMEKVMDIHSKYWRCL 1023
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17 Identity = 52/157 (33.12%), Postives = 92/157 (58.60%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 GA +EVG G+ VN+ + G +GD +Y+ AF+ VV+PIA+EF PD ++S+GFDA G PLG +++ + +T L L+GG++++ LEGG++L +I ++ + + LLG E ++ P+ + + ++ +V+ I +W L Sbjct: 868 GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVHSMEKVMGIHSEYWRCL 1024
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14 Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALS----GGKLLVILEGGYNLRSISSSATSVIKVLLGEN 351 G +++G EG +N+P GG GD F+ +++P A F PD ++SAG+DA DPL T A Y + + L+ GG+ + LEGGYNL S+SSS + LLGE+ Sbjct: 271 GKISDIGKGKGEGTTLNLPLP-GGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGED 390
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: Y245_SYNY3 (Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC 6803) GN=slr0245 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12 Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 19 GIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLL 342 G G +N+P GG G Y AF++ VLP + PD ++SAG+DA DPL ++ P Y MTH L +S +L LEGGY+L S++ S +K LL Sbjct: 198 GDRGQHDNVLNIPLKPGGDG-KVYREAFEHKVLPFLRQVKPDLLLVSAGYDANHSDPLAYMNLIPEDYGMMTHYLMEISPYPVLG-LEGGYHLPSLAKSVVETLKPLL 303
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11 Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALS----GGKLLVILEGGYNL 297 G E G EGY VN+P G GD Y+ ++ P+ +EF P F ISAG D DP+ +T GYA+M A++ G+L+ +LEGGY++ Sbjct: 194 GYPEECGTGKGEGYTVNIPLPPG-TGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARGYAEMMRRAVAMAEKHCDGRLVAVLEGGYSV 295 The following BLAST results are available for this feature:
BLAST of CK932985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK932985 ID=CK932985; Name=CK932985; organism=Citrus sinensis; type=EST; length=529bpback to top |