CK932985

Overview
NameCK932985
Unique NameCK932985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1511 contig Csv1_Contig1511:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19
Identity = 60/176 (34.09%), Postives = 102/176 (57.95%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGE--NPGCE-LGDSAPSKSGLVTVLEVLKIQMNFWPSL-ASCFTELQSLWEIYAAEN 501
            GA +EVG     G+ VN+ +  G    +GD +Y+ AF+ VV+PIASEF PD  ++S+GFDA  G   PLG  +++   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LLG   +P  E +    P+ + + ++ +V++I   +W  L  +  T  +SL E    EN
Sbjct:  875 GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCEN 1050          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 56/162 (34.57%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSK--------SGLVTVLEVLKIQMNFWPSL 447
            GA +EVG     G+ VN+ +  G    +GD +Y+ AF+ VV+PIA+EF PD  ++S+GFDA  G   PLG  +++   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LLG     EL D  P K        + + ++ +V++I   +W SL
Sbjct:  871 GAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGN----EL-DPLPEKVLQQRANANAVHSMEKVIEIHSKYWHSL 1027          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 53/157 (33.76%), Postives = 92/157 (58.60%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            GA +EVG     G+ VN+ +  G    +GD +Y+ AF+ VV+PIA+EF PD  ++S+GFDA  G   PLG  +++   +  +T  L  L+GG+L++ LEGG++L +I  ++ + +  LLG   E    ++    P+ + + ++ +V+ I   +W  L
Sbjct:  867 GAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRLVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVHSMEKVMDIHSKYWRCL 1023          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17
Identity = 52/157 (33.12%), Postives = 92/157 (58.60%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRG---GVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARG--DPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLG---ENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            GA +EVG     G+ VN+ +  G    +GD +Y+ AF+ VV+PIA+EF PD  ++S+GFDA  G   PLG  +++   +  +T  L  L+GG++++ LEGG++L +I  ++ + +  LLG   E    ++    P+ + + ++ +V+ I   +W  L
Sbjct:  868 GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVHSMEKVMGIHSEYWRCL 1024          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALS----GGKLLVILEGGYNLRSISSSATSVIKVLLGEN 351
            G  +++G    EG  +N+P   GG GD      F+ +++P A  F PD  ++SAG+DA   DPL     T A Y  +   +  L+    GG+ +  LEGGYNL S+SSS     + LLGE+
Sbjct:  271 GKISDIGKGKGEGTTLNLPLP-GGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGED 390          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: Y245_SYNY3 (Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC 6803) GN=slr0245 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   19 GIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLL 342
            G  G     +N+P   GG G   Y  AF++ VLP   +  PD  ++SAG+DA   DPL   ++ P  Y  MTH L  +S   +L  LEGGY+L S++ S    +K LL
Sbjct:  198 GDRGQHDNVLNIPLKPGGDG-KVYREAFEHKVLPFLRQVKPDLLLVSAGYDANHSDPLAYMNLIPEDYGMMTHYLMEISPYPVLG-LEGGYHLPSLAKSVVETLKPLL 303          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALS----GGKLLVILEGGYNL 297
            G   E G    EGY VN+P   G  GD  Y+     ++ P+ +EF P F  ISAG D    DP+    +T  GYA+M     A++     G+L+ +LEGGY++
Sbjct:  194 GYPEECGTGKGEGYTVNIPLPPG-TGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARGYAEMMRRAVAMAEKHCDGRLVAVLEGGYSV 295          
The following BLAST results are available for this feature:
BLAST of CK932985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
HDAC4_HUMAN4.784e-1934.09Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]
HDAC4_CHICK1.818e-1834.57Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE... [more]
HDAC4_MOUSE5.289e-1833.76Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=... [more]
HDAC4_RAT1.178e-1733.12Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac... [more]
HDA14_ARATH1.219e-1437.19Histone deacetylase 14 OS=Arabidopsis thaliana GN=... [more]
Y245_SYNY34.337e-1238.89Uncharacterized protein slr0245 OS=Synechocystis s... [more]
Y130_ARCFU1.262e-1136.89Uncharacterized protein AF_0130 OS=Archaeoglobus f... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932985 ID=CK932985; Name=CK932985; organism=Citrus sinensis; type=EST; length=529bp
GGGGCTGCGAATGAGGTTGGTATTGATGGTGCAGAAGGATATTGTGTAAA
TGTTCCGTGGAATCGTGGTGGAGTTGGAGATAATGATTATGTTTTTGCAT
TTCAGAATGTTGTTCTTCCCATAGCTTCGGAGTTTGATCCTGATTTCACT
ATCATATCAGCTGGATTTGATGCCGCAAGGGGTGATCCTTTAGGCTGCTG
TGATGTAACTCCTGCTGGATATGCACAGATGACACACATGCTGAATGCTC
TCTCCGGTGGCAAGTTGCTTGTTATACTCGAGGGCGGCTACAACCTCCGT
TCAATATCCTCTTCTGCTACTTCAGTGATTAAGGTATTGCTGGGTGAAAA
TCCTGGATGCGAATTAGGTGACTCTGCTCCTTCCAAATCTGGCCTGGTAA
CTGTTCTTGAAGTATTGAAGATTCAGATGAACTTCTGGCCTTCTCTAGCA
TCCTGCTTTACAGAATTGCAGTCACTATGGGAAATATACGCTGCTGAAAA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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