CK932989

Overview
NameCK932989
Unique NameCK932989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932989_ssr19 microsatellite CK932989_ssr19:19..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9505 contig Csv1_Contig9505:7..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD2_HORVU (Defender against cell death 2 OS=Hordeum vulgare GN=DAD2 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.665e-46
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 2
Query:   86 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TAL+QVVYM IVGSFPFNSFLSGVLS +GTA+L VCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLNKAYAATPTNLKIIDLYVVFAVATALVQVVYMGIVGSFPFNSFLSGVLSSIGTAVLGVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_HORVU (Defender against cell death 1 OS=Hordeum vulgare GN=DAD1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.819e-45
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 2
Query:   86 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TAL+QVVYM IVGSFPFNSFLSGVLSC+GTA+LAVC RIQVNKDNKEFKDL PERAFADFVLC+LVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLNKAYAATPTNLKIIDLYVVFAVVTALLQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCHRIQVNKDNKEFKDLAPERAFADFVLCSLVLHLVIMNFLG 114          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_MAIZE (Defender against cell death 1 (Fragment) OS=Zea mays GN=DAD1 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.491e-36
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2
Query:  173 AVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            AV TALIQV YM +VGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 AVATALIQVAYMGLVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 79          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_BOVIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Bos taurus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 7.186e-26
Identity = 55/101 (54.46%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    +ATP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSATPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_RAT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_PIG (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_MESAU (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_HUMAN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Homo sapiens GN=DAD1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_DROME (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Drosophila melanogaster GN=CG13393 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.566e-25
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  131 TPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKE-FKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            TP  LK++D+Y+G+ + T +IQ VY  +VG+FPFNSFLSG +S V   +LAVCLR+Q N  NK  F  + PER FADF+  +++LHLV+MNF+G
Sbjct:   19 TPKKLKLVDIYLGYILLTGIIQFVYCCLVGTFPFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAHVILHLVVMNFIG 112          
The following BLAST results are available for this feature:
BLAST of CK932989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD2_HORVU3.665e-4685.19Defender against cell death 2 OS=Hordeum vulgare G... [more]
DAD1_HORVU1.819e-4584.26Defender against cell death 1 OS=Hordeum vulgare G... [more]
DAD1_MAIZE4.491e-3692.41Defender against cell death 1 (Fragment) OS=Zea ma... [more]
DAD1_BOVIN7.186e-2654.46Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_RAT1.601e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_PIG1.601e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MOUSE1.601e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MESAU1.601e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_HUMAN1.601e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_DROME3.566e-2554.26Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932989 ID=CK932989; Name=CK932989; organism=Citrus sinensis; type=EST; length=611bp
GGGGAGGGCACATGTATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ATTACAGAGAGGAAATGGCGAGATCGACCGGCAAAGACGCTCAAGCCCTT
TTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACAACTCTTAAGAT
CATCGATCTGTATATGGGTTTCGCGGTTTTTACTGCCTTAATTCAGGTAG
TTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTCTTTCGGGA
GTACTTTCTTGTGTTGGGACAGCCATACTTGCTGTTTGTCTACGTATTCA
AGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGAGCGAGCTT
TTGCGGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATGAAT
TTCCTTGGATAAACCTTGACCCTGGGTCAACTTAAAATACAATTTTCTTG
GTCGATGACAGTGTGACCTAGCTGTAAAAGTTAGTTACGACATTAATGCA
GATATTTTTCATAGAATGTGAACTTACTATAAATGAAGACGTTGACCATT
TTTGGATTCTTTTGGTTCTATATTTAATTCCGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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