CK932989

Overview
NameCK932989
Unique NameCK932989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932989_ssr19 microsatellite CK932989_ssr19:19..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9505 contig Csv1_Contig9505:7..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_XENLA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1 OS=Xenopus laevis GN=dad1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.083e-25
Identity = 52/96 (54.17%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  125 AATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ++TP  LK++D Y+ + + T  +Q +Y  +VG+FPFNSFLSG +S VG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  N +LHLV++NF+G
Sbjct:   18 SSTPQRLKLLDAYLLYILLTGALQFLYCLLVGTFPFNSFLSGFISSVGSFILAVCLRIQINPQNKSDFQGISPERAFADFLFANTILHLVVVNFIG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_CAEEL (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad-1 OS=Caenorhabditis elegans GN=dad-1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.019e-24
Identity = 53/94 (56.38%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  131 TPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            T + LKIID YM + +FT + Q +Y  +VG+FPFNSFLSG +S V + +LA CLR+QVN++N+ EF  +  ERAFADF+  NL+LHLV++NFLG
Sbjct:   20 TSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFISTVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILHLVVVNFLG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_PONAB (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pongo abelii GN=DAD1 PE=3 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  110 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ ILAV LRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVRLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_DICDI (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Dictyostelium discoideum GN=ost2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.556e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   95 ALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ++  S   +Y+ TP  LKIIDL++ +   T +I   Y  +VG++PFNSFL+  +S VG  +L VCLRIQ+N  N   K +  ERAF D++LCNL+LHLV+ NFLG
Sbjct:   16 SIVKSFFESYSKTPQKLKIIDLFLIYTFITGVIVFTYCCLVGTYPFNSFLAAFISTVGCFVLTVCLRIQINPINNFGKTISIERAFTDYLLCNLILHLVVFNFLG 120          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_CHICK (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Gallus gallus GN=DAD1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 51/96 (53.12%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  125 AATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            + T + LK++D Y+ + + T  +Q  Y   VG+FPFNSFLSG +S VG+ IL VCLRIQ+N  NK EF+ + PERAFADF+  N +LHLV++NF+G
Sbjct:   28 SGTSSRLKVLDAYLLYVMLTGALQFGYCLGVGTFPFNSFLSGFISAVGSFILGVCLRIQINPQNKGEFQGISPERAFADFLFANTILHLVVINFVG 123          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: OST2_SCHPO (Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost2 OS=Schizosaccharomyces pombe GN=ost2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  131 TPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKD--------LPPERAFADFVLCNLVLHLVIMNFLG 409
            T  +LK ID ++GF V    +Q  Y  +VG++PFNSFLSG +SCVG  ++ V  R+ + +   +            P +RAF +F   +LVLH   +NFLG
Sbjct:   22 TNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLHFFAVNFLG 122          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: OST2_YEAST (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 OS=Saccharomyces cerevisiae GN=OST2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 2
Query:   86 DAQALFHSLRSAYAATPTT---LKIIDLYMGFAVFTALIQVVYMAIV-GSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFL 406
            D Q  F + + AY A       LK+ID +  F V   +IQ  ++ ++  +FPFN+FL+G + CVG  +L + LR+Q+      F  +   RAFA+F++ +L+LH V ++F+
Sbjct:   22 DFQETFKTSKRAYFAQIEKYPKLKLIDTFCFFLVLLGVIQCTFIILIRDNFPFNAFLAGFIICVGQFVLLMSLRLQL---CNSFPGISKNRAFAEFIVASLILHFVCLHFI 129          
The following BLAST results are available for this feature:
BLAST of CK932989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_XENLA6.083e-2554.17Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_CAEEL3.019e-2456.38Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_PONAB3.943e-2452.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_DICDI2.556e-2348.57Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_CHICK4.360e-2353.13Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
OST2_SCHPO6.976e-1338.61Probable dolichyl-diphosphooligosaccharide--protei... [more]
OST2_YEAST1.007e-1135.14Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932989 ID=CK932989; Name=CK932989; organism=Citrus sinensis; type=EST; length=611bp
GGGGAGGGCACATGTATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ATTACAGAGAGGAAATGGCGAGATCGACCGGCAAAGACGCTCAAGCCCTT
TTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACAACTCTTAAGAT
CATCGATCTGTATATGGGTTTCGCGGTTTTTACTGCCTTAATTCAGGTAG
TTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTCTTTCGGGA
GTACTTTCTTGTGTTGGGACAGCCATACTTGCTGTTTGTCTACGTATTCA
AGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGAGCGAGCTT
TTGCGGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATGAAT
TTCCTTGGATAAACCTTGACCCTGGGTCAACTTAAAATACAATTTTCTTG
GTCGATGACAGTGTGACCTAGCTGTAAAAGTTAGTTACGACATTAATGCA
GATATTTTTCATAGAATGTGAACTTACTATAAATGAAGACGTTGACCATT
TTTGGATTCTTTTGGTTCTATATTTAATTCCGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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