CK933038

Overview
NameCK933038
Unique NameCK933038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK933038 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEEL (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.672e-27
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 2 
Query:  158 ANVERVNAELFTLTYGAAVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKMGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 568
            A+ ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LG++AT S+W +     +I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   10 ADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYSQLIAGAIRGALEAVHFK 149
The following BLAST results are available for this feature:
BLAST of CK933038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CAEEL1.672e-2745.71Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933038 ID=CK933038; Name=CK933038; organism=Citrus sinensis; type=EST; length=816bp
GGGGCGGTCGAGTCACTGGTATTGCACTGGGACATTGAGGCGAGCTAAGG
AGGAAGAAGATAAAAAACCTATAAATTCTGGTGATCAAATTTAGTTATCG
CTTTGCAGAGATCTCATAATGGCTCCCGTTGGTCCTCGATCCGGTGACGC
AATCTTCGCCAACGTGGAACGCGTGAATGCTGAGCTGTTTACATTAACTT
ACGGCGCCGCTGTGCGTCAGCTGCTCACGGATCTGGAGGAGGTTGAGGAA
GTTAACAAACAGCTTGATCAAATGGGCTATAATATTGGGATTCGACTGAT
TGATGAGTTTCTAGCAAAATCTAATGTCACTAGGTGTGTAGACTTCAGGG
AGACTGCTGAAGTGATTGCAAAGATGGGTTTCAAAATGTTTTTAGGGGTT
ACTGCAACCGTGAGCAACTGGGATGCTGATGGGACATGTTGCAGTATAAT
TTTGGAAGATAATCCTCTGGTGGATTTTGTTGAGCTTCCTGATACTTGTC
AAGGCCTTTATTATTGCAACATCTTGAGTGGAGTCATTAGAGGGGCCCTA
GAGATGGTTTCAATGAAAACTGAAGTCACTTGGATCCGCGATGTGCTTCG
AGGGGATGATGCATATGAGCTGCAGGTGAAACTTCTGAAACAAGTCCCAG
AAGAATATCCATACAAGGATGATGAGTAATATCCTGTCTTGGTGCCTGAT
GCGGACATACCGAGTTTACATTCTTGCACTTCATTTTCCCTAAAGAATAT
CAGTTTTAACAGCTTGTTCTCTGTATAAATATTCACTTGGGAGAAACTTT
TGATAGGTTTTCCGTT
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