CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CLOBK (GTPase obg OS=Clostridium botulinum (strain Okra / Type B1) GN=obg PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 52/171 (30.41%), Postives = 77/171 (45.03%), Query Frame = 2
Query:   74 RALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            R  +P    P  ++      ER I         +G++G PNVGKSTL + ++K      N+ F T++PN   V+I                 V  F+ I DI G++ GA EG GLG  FL H+     + HV+      DI  V+   DP  D   I+ EL+   ++  +R
Sbjct:  128 RFTTPTRQAPDFAEPGMPEEERWIKLELKLLADVGLIGFPNVGKSTLLSVVSKARPKIANYHFTTLKPNLGVVSI---------------EGVNNFV-IADIPGIIEGASEGVGLGLDFLRHVERTRVLIHVI------DISSVEGR-DPYDDFLKINEELKRYSVKLYDR 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CLOBH (GTPase obg OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=obg PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 52/171 (30.41%), Postives = 77/171 (45.03%), Query Frame = 2
Query:   74 RALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            R  +P    P  ++      ER I         +G++G PNVGKSTL + ++K      N+ F T++PN   V+I                 V  F+ I DI G++ GA EG GLG  FL H+     + HV+      DI  V+   DP  D   I+ EL+   ++  +R
Sbjct:  128 RFTTPTRQAPDFAEPGMPEEERWIKLELKLLADVGLIGFPNVGKSTLLSVVSKARPKIANYHFTTLKPNLGVVSI---------------EGVNNFV-IADIPGIIEGASEGVGLGLDFLRHVERTRVLIHVI------DISSVEGR-DPYDDFLKINEELKRYSVKLYDR 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CLOB1 (GTPase obg OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=obg PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 52/171 (30.41%), Postives = 77/171 (45.03%), Query Frame = 2
Query:   74 RALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            R  +P    P  ++      ER I         +G++G PNVGKSTL + ++K      N+ F T++PN   V+I                 V  F+ I DI G++ GA EG GLG  FL H+     + HV+      DI  V+   DP  D   I+ EL+   ++  +R
Sbjct:  128 RFTTPTRQAPDFAEPGMPEEERWIKLELKLLADVGLIGFPNVGKSTLLSVVSKARPKIANYHFTTLKPNLGVVSI---------------EGVNNFV-IADIPGIIEGASEGVGLGLDFLRHVERTRVLIHVI------DISSVEGR-DPYDDFLKINEELKRYSVKLYDR 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BORPD (GTPase obg OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=obg PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDP----VRDLEVISAELRLKDIEFMER 586
            +G++GLPN GKSTL + ++       ++PF T+ PN   V                 SA  +F+ + DI GL+ GA EG GLG+ FL H+     + H++      DI   D   DP    V D   I  ELR  D E  ++
Sbjct:  162 VGLLGLPNAGKSTLISRISNARPKVADYPFTTLHPNLGVVR---------------TSASRSFV-VADIPGLIEGASEGAGLGHLFLRHLARTRVLLHLV------DISSPDPDTDPIEQAVADARAIVEELRRYDPELADK 281          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BORA1 (GTPase obg OS=Bordetella avium (strain 197N) GN=obg PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLR-AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++GLPN GKSTL + ++       ++PF T+ PN   V     R               +F+ + DI GL+ GA EG GLG+ FL H+     + H++  +  DPD   ++ +V+  R    I  ELR  D E  E+
Sbjct:  162 VGLLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSR---------------SFV-VADIPGLIEGASEGAGLGHLFLRHLARTRVLLHLVDVSSPDPDADPIESAVENAR---AIVEELRRYDPELAEK 281          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_ACHLI (GTPase obg OS=Acholeplasma laidlawii (strain PG-8A) GN=obg PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 50/169 (29.59%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  107 ASKSKEAP--AERPILGR-FSSHLK------IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            AS + +AP  AE+  LG+ F + ++      +G++G PNVGKSTL   ++       ++ F T+ P    VN+ D+ F                  + D+ GL+  AH G GLG  FL H+     + H++            DS+DP+ D   I+ EL L D +  +R
Sbjct:  131 ASNNNKAPDFAEQGDLGQIFLAKVELQVLADVGLLGYPNVGKSTLITRISNAKAKIADYQFTTLSPQLGMVNVEDDAF-----------------VVADLPGLIEFAHLGVGLGLQFLKHVERCRVLLHIVSM----------DSLDPLDDYNKINNELVLYDEKLKDR 272          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_CLOBK9.579e-1130.41GTPase obg OS=Clostridium botulinum (strain Okra /... [more]
OBG_CLOBH9.579e-1130.41GTPase obg OS=Clostridium botulinum (strain Hall /... [more]
OBG_CLOB19.579e-1130.41GTPase obg OS=Clostridium botulinum (strain ATCC 1... [more]
OBG_BORPD9.579e-1133.10GTPase obg OS=Bordetella petrii (strain ATCC BAA-4... [more]
OBG_BORA19.579e-1132.37GTPase obg OS=Bordetella avium (strain 197N) GN=ob... [more]
OBG_ACHLI9.579e-1129.59GTPase obg OS=Acholeplasma laidlawii (strain PG-8A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
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