CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURA4 (GTPase obg OS=Burkholderia ambifaria (strain MC40-6) GN=obg PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 51/160 (31.87%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D++VDPV + + I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLRLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDENVDPVAEAKAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_ACIAC (GTPase obg OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=obg PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKST    ++       ++PF T+ PN   V + P++ F                  + DI GL+ GA EG GLG+ FL H++    + HV+      D+   D+SVDPV     I  ELR  D E  E+
Sbjct:  162 VGLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFV-----------------VADIPGLIEGASEGAGLGHQFLRHLQRTRLLLHVV------DLAPFDESVDPVAQATAIVGELRKYDAELYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RALPJ (GTPase obg OS=Ralstonia pickettii (strain 12J) GN=obg PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKSTL   ++       ++PF T+ PN   V   P + F                  + DI GL+ GA EG GLG+ FL H++    + HV+      D+   D+SVDPV + + I  EL+  D E  ++
Sbjct:  162 VGLLGMPNAGKSTLITAISNARPKIADYPFTTLHPNLGVVRTGPSKSF-----------------VVADIPGLIEGAAEGAGLGHQFLRHLQRTRVLLHVV------DLAPFDESVDPVAEAKAIVGELKKYDAELFDK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURTA (GTPase obg OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=obg PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV + + I  ELR  D
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDESVDPVAEAKAIVGELRKYD 271          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURCM (GTPase obg OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=obg PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D++VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLRLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDENVDPVAEARAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_ACISJ (GTPase obg OS=Acidovorax sp. (strain JS42) GN=obg PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKST    ++       ++PF T+ PN   V + P++ F                  + DI GL+ GA EG GLG+ FL H++    + HV+      D+   D+SVDPV   + I AEL+  D +  E+
Sbjct:  162 VGLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFV-----------------VADIPGLIEGASEGAGLGHQFLRHLQRTRLLLHVV------DMAPFDESVDPVAQAKAIVAELKKYDTQLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: YHOF_SCHPO (Uncharacterized GTP-binding protein C428.15 OS=Schizosaccharomyces pombe GN=SPBC428.15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF------KP-----KSAVPAF-LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVL 472
            IG VG P+ GKST+ N LT       NFPF TIEPN A   I   + E  C  F      KP     K+ V +  +++ D+AGL+ GAH G+GLGN FL  +R    + HV+
Sbjct:    7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRA---IGYAQIECACSRFGLQDKCKPIYGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVV 115          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_DESHD (GTPase obg OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 70/232 (30.17%), Postives = 100/232 (43.10%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAK 763
            +R +S     P  +++ E   ER +L        +G+VG PNVGKST+ + ++       ++ F T+ PN   V + D E F                  + DI GL+ GAH G GLG+ FL H      I HVL      DI   ++  DP+ D ++I+ ELR    E   R I  V      +N   +    E  QR+   L  G+D R+    AA  E L       AK
Sbjct:  127 ARFMSNTNKAPTVAENGEPGEERNLLLELKLLADVGLVGFPNVGKSTIISRISAAKPKIADYHFTTLVPNLGVVELEDGESF-----------------VVADIPGLIEGAHTGAGLGHEFLRHTERTRLILHVL------DIAGSEER-DPLEDFQIIAEELRQYSQELANRPILIV------ANKMDIPGAEENLQRLTEKL--GEDYRIFPVSAATGEGLKELVYAAAK 326          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_DECAR (GTPase obg OS=Dechloromonas aromatica (strain RCB) GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 46/128 (35.94%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAEL 556
            +G++GLPN GKSTL   ++       ++PF T+ PN   V + DE           KS V A     D+ GL+ GA +G GLG  FL H++    + H++      DI  +D   DPVRD + I  EL
Sbjct:  162 VGLLGLPNAGKSTLIRAISSARPKVADYPFTTLHPNLGVVRVDDE-----------KSFVMA-----DVPGLIEGAADGAGLGIRFLKHLQRTRILLHLV------DIAPIDPDSDPVRDAKAIVGEL 267          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CORGL (GTPase obg OS=Corynebacterium glutamicum GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 48/159 (30.19%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  107 ASKSKEAPA---------ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAEL 556
            ASK+++AP             ++    S   +G+VG P+ GKS+L + ++       ++PF T++PN   VN+  E F                  + D+ GL+ GA EG+GLG  FL HI     + HV+      D   +D   DP+ D+E + AEL
Sbjct:  131 ASKARKAPGFALIGEPGEAHDLILELKSMADVGLVGFPSAGKSSLISVMSAAKPKIGDYPFTTLQPNLGVVNVGHETF-----------------TMADVPGLIPGASEGKGLGLDFLRHIERTSVLVHVV------DTATMDPGRDPISDIEALEAEL 266          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_BURA41.579e-1331.88GTPase obg OS=Burkholderia ambifaria (strain MC40-... [more]
OBG_ACIAC1.579e-1333.09GTPase obg OS=Acidovorax avenae subsp. citrulli (s... [more]
OBG_RALPJ2.062e-1332.37GTPase obg OS=Ralstonia pickettii (strain 12J) GN=... [more]
OBG_BURTA2.062e-1333.12GTPase obg OS=Burkholderia thailandensis (strain E... [more]
OBG_BURCM2.062e-1331.88GTPase obg OS=Burkholderia ambifaria (strain ATCC ... [more]
OBG_ACISJ2.062e-1332.37GTPase obg OS=Acidovorax sp. (strain JS42) GN=obg ... [more]
YHOF_SCHPO2.693e-1341.96Uncharacterized GTP-binding protein C428.15 OS=Sch... [more]
OBG_DESHD2.693e-1330.17GTPase obg OS=Desulfitobacterium hafniense (strain... [more]
OBG_DECAR2.693e-1335.94GTPase obg OS=Dechloromonas aromatica (strain RCB)... [more]
OBG_CORGL2.693e-1330.19GTPase obg OS=Corynebacterium glutamicum GN=obg PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
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