CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_FINM2 (GTPase obg OS=Finegoldia magna (strain ATCC 29328) GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 592
            P+ ++  E   E+ I         +G++GLPNVGKSTL + ++       N+ F T+EPN     + ++ F                  + DI GL+ GA EG GLG+ FL HI     + HVL        I   +  +P+ D E+I++EL   +I+  ++++
Sbjct:  137 PRFAEPGEKGEEKTIKLELKLLADVGLIGLPNVGKSTLLSIMSNARPKIANYHFTTLEPNLGVCKVGEKSF-----------------VLADIPGLIEGASEGLGLGHDFLKHIERTKILVHVLD-------ISGSEGRNPIEDFELINSELSSYNIKLNDKKM 276          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_DESPS (GTPase obg OS=Desulfotalea psychrophila GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 51/162 (31.48%), Postives = 74/162 (45.68%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            P+ +   +   E+ +L        +G+VGLPN GKSTL + L+       ++PF T+EP    ++ P              S +     I DI GLV GAH+G GLG+ FL H+     + HV+ A  D          DP  D ++I  ELR    E  +R
Sbjct:  138 PRVATKGKLGEEKWLLIELKLMADVGLVGLPNAGKSTLLSKLSAANPKVADYPFTTLEPQLGMLHFP-----------MRNSCI-----IADIPGLVEGAHQGVGLGHKFLRHVERTKILVHVIDASAD----------DPFSDYDIIGNELRSYKEELADR 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BACHD (GTPase obg OS=Bacillus halodurans GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 53/172 (30.81%), Postives = 80/172 (46.51%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +R  +P    P+ S++ E   ER ++         G+VG P+VGKSTL + ++        + F TI PN   V + D R               +F+ + D+ GL+ GAHEG GLG+ FL HI     I HV+        +   +  DP  D   I+ EL+  ++  MER
Sbjct:  127 TRFATPANPAPELSENGEPGVERDVILELKVLADAGLVGFPSVGKSTLLSVVSSAKPKIAEYHFTTITPNLGVVRVDDGR---------------SFV-LADLPGLIEGAHEGIGLGHQFLRHIERTRVIVHVID-------MSALEGRDPYDDYVSINEELKAYNLRLMER 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RALME (GTPase obg OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            +G++G+PN GKST  + ++       ++PF T+ PN   V +  E+               +F+ + DI GL+ GA EG GLG+ FL H++  G + H++      DI   D++VDPV + + I  EL+  D
Sbjct:  162 VGLLGMPNAGKSTFISHVSNARPKVADYPFTTLHPNLGVVRVDHEQ---------------SFV-VADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DIAPFDENVDPVAEAKAIVNELKKYD 271          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_DELAS (GTPase obg OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKST    ++       ++PF T+ PN   V +  E+               +F+ + DI GL+ GA EG GLG+ FL H++    + HV+      D+   DDSVDPV   + I  EL+  D E   +
Sbjct:  162 VGLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVAAEQ---------------SFV-VADIPGLIEGASEGAGLGHQFLRHLQRTRLLLHVV------DLAPFDDSVDPVAQAKAIVGELQKYDAELYNK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CUPTR (GTPase obg OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKST  + ++       ++PF T+ PN   V +  E+               +F+ + DI GL+ GA EG GLG+ FL H++  G + H++      D+   D++VDPV +   I  EL+  D    E+
Sbjct:  162 VGLLGMPNAGKSTFISHISNARPKVADYPFTTLHPNLGVVRVDHEQ---------------SFV-VADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DLAPFDEAVDPVAEARAIVNELKKYDETLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURPS (GTPase obg OS=Burkholderia pseudomallei GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURP6 (GTPase obg OS=Burkholderia pseudomallei (strain 668) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURP1 (GTPase obg OS=Burkholderia pseudomallei (strain 1710b) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURP0 (GTPase obg OS=Burkholderia pseudomallei (strain 1106a) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_FINM23.517e-1329.27GTPase obg OS=Finegoldia magna (strain ATCC 29328)... [more]
OBG_DESPS3.517e-1331.48GTPase obg OS=Desulfotalea psychrophila GN=obg PE=... [more]
OBG_BACHD3.517e-1330.81GTPase obg OS=Bacillus halodurans GN=obg PE=3 SV=1[more]
OBG_RALME4.594e-1332.58GTPase obg OS=Ralstonia metallidurans (strain CH34... [more]
OBG_DELAS4.594e-1332.61GTPase obg OS=Delftia acidovorans (strain DSM 1480... [more]
OBG_CUPTR4.594e-1331.16GTPase obg OS=Cupriavidus taiwanensis (strain R1 /... [more]
OBG_BURPS4.594e-1331.88GTPase obg OS=Burkholderia pseudomallei GN=obg PE=... [more]
OBG_BURP64.594e-1331.88GTPase obg OS=Burkholderia pseudomallei (strain 66... [more]
OBG_BURP14.594e-1331.88GTPase obg OS=Burkholderia pseudomallei (strain 17... [more]
OBG_BURP04.594e-1331.88GTPase obg OS=Burkholderia pseudomallei (strain 11... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
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