CK933179

Overview
NameCK933179
Unique NameCK933179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.878e-24
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKA--KTKKNG----SHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RLYV+    G+KR    Q  +TSL+++EGV  KE+  +Y GKR+ Y++KA  KT K G    +  R IWGK+ R HGN+G VRAKF  N+PP ++G R+RV +YPSNI
Sbjct:   17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.183e-24
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RLYV+   L ++RSK    P TS++++EG ++KEE  +Y GKR+ Y++K+     GS  R IWG +AR HGNSG VRA+F  NLP K+ G  +RV +YPSNI
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.463e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.463e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.318e-24
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGK+ R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of CK933179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL35A_CAEEL1.878e-2450.0060S ribosomal protein L35a OS=Caenorhabditis elega... [more]
RL33B_SCHPO4.183e-2450.0060S ribosomal protein L33-B OS=Schizosaccharomyces... [more]
RL35A_RAT5.463e-2449.5360S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_MOUSE5.463e-2449.5360S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_PONAB7.135e-2449.5360S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA7.135e-2449.5360S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN7.135e-2449.5360S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_BOVIN9.318e-2448.6060S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933179 ID=CK933179; Name=CK933179; organism=Citrus sinensis; type=EST; length=633bp
GGGGCCTCCAACTAGGGTTTCTTCTTTGCAGACTCAGGCGGCAAGCAGGT
GGGCAGAGCTTCAATCATAAACAATGGTGAAGGGCAGGCAAGGCGAGCGC
GTCAGACTCTATGTTCGAGGAACAATTCTGGGATACAAAAGGTCAAAATC
AAACCAATGTCCAAACACATCACTGATTCAGGTCGAGGGAGTGAACACAA
AGGAAGAGGTGGCGTGGTACTGCGGCAAGCGTTTGGCTTACATTCACAAG
GCCAAGACTAAGAAGAACGGATCCCACTACCGTTGCATTTGGGGAAAAGT
TGCCAGATCTCACGGTAACAGCGGCGTCGTTCGCGCCAAGTTCAAGTCCA
ATCTCCCTCCCAAATCCATGGGAGATAGAGTTAGGGTTTTCATGTATCCC
AGCAACATATGAGCAGCATGGTTCGAGAAGCTACTCGATCAACAAGTGAA
ATTTACCTTCTGAATTTGGGATTTATTCGCTTAACATTTATGTTGCAAGA
TTTTGGAGTTGGGAGTTATACTGGCTAGATGTTTTGGCTTTTGCTACTGT
TAGTGTGGATTTTGGAACATTAATTTTAATGTTAATGCTTAGTTTTTTGT
TTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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