CK933242

Overview
NameCK933242
Unique NameCK933242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 62/97 (63.92%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGR+ RFL+KG Y++RVG+GAP                  GNAARDNKK +I PRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT
Sbjct:   24 QFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGR+ RFL+KG Y+QRVG+GAP                  GNAA DNKK +IIPRH+QLA+RNDEEL KLL GVTIA GGVLPNI  VLLPKKT
Sbjct:   11 QFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNE 300
            QFPVGRI RFLK GRYS+R+G+GAP                  GNAA+DNKK +I+PRH+ LA+RNDEEL KL+   TIA GGVLPNINP+LLP KT +
Sbjct:   29 QFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNE 300
            QFPVGRI RFLK GRYS+R+G+GAP                  GNAA+DNKK +I+PRH+ LA+RNDEEL KL+   TIA GGVLPNINP+LLP KT +
Sbjct:   29 QFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKK 127          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.812e-28
Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 291
            QFPVGR+ RFL+KG Y+ RVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK
Sbjct:   24 QFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 4.812e-28
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGR+ R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT
Sbjct:   25 QFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 4.812e-28
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGR+ R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT
Sbjct:   25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.812e-28
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGR+ R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT
Sbjct:   25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKT 121          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 63/97 (64.95%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGR+ R L+KG Y+QRVG+GAP                  GNAARDNKK +I PRH+QLAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKT
Sbjct:   26 QFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.208e-28
Identity = 62/101 (61.39%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERV 306
            QFPVGR+ R L+KG Y++RVG+GAP                  GNAARDNKK +IIPRH+QLA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK++  V
Sbjct:   25 QFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSATV 125          
The following BLAST results are available for this feature:
BLAST of CK933242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
H2A_ASTRU3.685e-2863.92Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2A3_LYTPI3.685e-2864.95Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A1_TETTH3.685e-2859.60Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY3.685e-2859.60Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2A4_PSAMI4.812e-2865.63Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A2B_MOUSE4.812e-2864.95Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN4.812e-2864.95Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1_XENLA4.812e-2864.95Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_CAEEL6.285e-2864.95Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2AX_MOUSE8.208e-2861.39Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_H01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933242 ID=CK933242; Name=CK933242; organism=Citrus sinensis; type=EST; length=557bp
GGGCAATTCCCGGTAGGTAGAATCGGGCGTTTCTTGAAGAAGGGAAGATA
TTCGCAGCGTGTGGGTAGCGGTGCTCCAGTTTACATGGCCGCTGTGCTCG
AGTACCTAGCTGCTGAAGTATTGGAGTTGGCTGGGAACGCGGCACGTGAC
AACAAGAAGAAGAAGATCATCCCAAGGCACGTGCAATTAGCGGTGAGGAA
TGACGAGGAGTTGGGGAAATTACTCACAGGTGTGACGATTGCAAGCGGCG
GCGTTTTGCCTAATATCAACCCAGTACTGTTGCCAAAGAAGACTAATGAA
CGTGTTGCGAAGGAGCCCAAATCTCCATCCAAGGCTACCAAGTCCCCAAA
GAAAGCCTAGATTAGTTGTATCTTGAGTACTACCCGTGTGTAATGTTCAG
TCTAGGTTTTCCCATTTTGCTCTTTTTTCTTTTGATATATGCTGTGTGTA
TGTTGTTAGCATAGCCTCGGCCTGTTAAATGAATTGAAACAAGTTGTTTT
TTTGTAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top