CK933253

Overview
NameCK933253
Unique NameCK933253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.234e-26
Identity = 71/168 (42.26%), Postives = 102/168 (60.71%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 569
            +K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+++ SSSSM + LER    +    + +  + E L+L     Y +L           R + GEEL  LN +EL+ LER L+  L ++   +   ++  + +LQ K   L E N+ L+Q++ME
Sbjct:    8 IKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLE-LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVME 173          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.234e-26
Identity = 67/185 (36.22%), Postives = 108/185 (58.38%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNT---LQLNPSAE 611
            +KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GKLY F S  +++K L+RY K +         A +   L  + + L   + YE L+     L+G  +  ++   L  LE  L+ +L   R+ +T+ ML  +  L+ KE++L E N+ L  ++   + V     ++++P+ +
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQH---------ADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEMSPAGQ 183          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.605e-25
Identity = 71/168 (42.26%), Postives = 103/168 (61.31%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLM 566
            +KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFS++GKL+E+CS   SM + + RY +   GA  P    R  L      E  K++     LQ S +   G++L     +EL  LE+QL+ +L +IR+ + + M   +  L+  E++L + N  + Q LM
Sbjct:   11 VKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTT-GASLPVEDNRVQL----YDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM 173          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.359e-24
Identity = 66/172 (38.37%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQK-CNYGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGY 575
            +KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS +  L+ L E YQ   N    E N   +  +E++      +++   E L    R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KE +L + N  L + + E +
Sbjct:    8 IKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIFVEMT------RMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENH 173          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.027e-24
Identity = 64/169 (37.87%), Postives = 103/169 (60.95%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPE-PNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLM 566
            +KRIEN  +RQVTF+KRR+GL+KK +ELSVLCDA++ LI+FS +GKL E+C+   SM + ++RY K     PE  N +   A      +E  ++K     LQ + +   G++L  +  +EL  LE+ LD SL ++R+ + + + + +  L+  E +L + N+ +   LM
Sbjct:    8 VKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLM 176          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.954e-24
Identity = 67/169 (39.64%), Postives = 103/169 (60.95%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELS-SRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 569
            +KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FS+ GKL  F +SSSM + +++Y   N  +     + + +L+L+    +Y  L  +        R + GEEL  L+  EL+ LE+ L+  L ++  T+ Q  ++ ++ELQ K   L+E N  L+ ++ +
Sbjct:    8 IKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHF-ASSSMNEIIDKY---NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQ 172          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 65/182 (35.71%), Postives = 101/182 (55.49%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAE 611
            ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS  GKL++F +S+SM + ++RY   +        S  + L+        +LK          R + GEEL  LN ++L+ LE+ L+  L  +  T+++ +LD +  L+ K   L E N  LK++L         ++ P  +
Sbjct:   27 IRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQF-ASTSMEQIIDRYNSHSKTLQRAEPSQLD-LQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEMQPGPD 206          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.563e-23
Identity = 68/171 (39.77%), Postives = 102/171 (59.65%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSML-KTLERYQKCN----YGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 563
            +KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+LIIF N GK++E+CS S+ L   L+ YQK +    + A   N+S           E  ++K   + +Q   R+L GE++  LN KEL  LE  L   L  I + ++    + L  ++  +Q+L E +K L+  L
Sbjct:    8 IKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLS----------NEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQS----EILRMVRKNDQILEEEHKQLQYAL 164          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSR-QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 563
            +KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S  +M K ++RY+         +    EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+ +L   R+ +T+ M+  +  LQ  E LL E N+TL  ++
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-------IHHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQV 164          
BLAST of CK933253 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 71/195 (36.41%), Postives = 107/195 (54.87%), Query Frame = 3
Query:   66 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQ----KCNYGAPEPNVSAREALELSSRQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKP 635
            +KRIEN  NRQVTF+KRR+G+LKKA E+SVLCDAEV ++IFS+ GKLY++CS  +S+ + LE+YQ    K  +     ++SA          E  ++K   + +Q   R+L GE+L  L  KEL  +E  LD  +  +       ++D        +++L + NK L  +L +      + L+ S  D   G  P
Sbjct:    8 IKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLLAFKLHQ----QDIALSGSMRDLELGYHP 184          
The following BLAST results are available for this feature:
BLAST of CK933253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
JOIN_SOLLC3.234e-2642.26MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
FLC_ARATH3.234e-2636.22MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
FBP24_PETHY1.605e-2542.26MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD29_ORYSJ1.359e-2438.37MADS-box transcription factor 29 OS=Oryza sativa s... [more]
DEF21_ANTMA3.027e-2437.87MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
MAD22_ORYSJ3.954e-2439.64MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD47_ORYSJ1.962e-2335.71MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MADS2_PETHY2.563e-2339.77Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
AGL31_ARATH4.371e-2338.92Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MADS2_ORYSJ7.456e-2336.41MADS-box transcription factor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_G06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933253 ID=CK933253; Name=CK933253; organism=Citrus sinensis; type=EST; length=829bp
GGGATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAATGGGA
AGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGT
GACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTT
CCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGA
AAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAG
GTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGG
AGGCCCTGGAGCTAAGTAGCCGGCAAGAATATCTGAAGCTTAAAGCACGA
TATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGG
CCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGT
CATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTT
ACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCT
CAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATC
CTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGC
GATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATA
CCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATA
ATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGNNNTACCAG
TCAATGTATTGCAGTTGATCCATAAGAAT
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