CK933254

Overview
NameCK933254
Unique NameCK933254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.180e-56
Identity = 114/250 (45.60%), Postives = 162/250 (64.80%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P + +   +G  T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF+ EL+EV +E   Y+M P +A++  DENTI V   LG T T ++EDVK   + L K  +E G D PIHVDAASGGF
Sbjct:    1 MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSE--TIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGF 247          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.542e-56
Identity = 110/244 (45.08%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP +KPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.105e-54
Identity = 110/242 (45.45%), Postives = 152/242 (62.81%), Query Frame = 3
Query:  177 DSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            D  + L   +        I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T ++     ++   I+KN +D DEYP + E++NRC++++A L+N P  D    +G  T GSSEA ML GLA K  W++ RK+ G PYDKPNIVTG  VQ+CW KFA YF+ E++E+ +E G YVMN  + ++ VDENTI V   LG T T ++EDV    + L K  +E G + PIHVDAASGGF
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHVDAASGGF 245          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 7.918e-53
Identity = 103/251 (41.04%), Postives = 158/251 (62.95%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGG 899
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y++ E++EV ++  +  +N  K ++ VDE TI V  I+G T TG ++D+K   +L+ + N++  +   IHVDAASGG
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGG 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.918e-53
Identity = 103/251 (41.04%), Postives = 159/251 (63.35%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGG 899
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y++ E++EV +++ +  +N  K ++ VDE TI V  I+G T TG ++D+K   +L+ + N++  +   IHVDAASGG
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGG 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.446e-46
Identity = 98/227 (43.17%), Postives = 141/227 (62.11%), Query Frame = 3
Query:  237 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKL-EEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTK-KNEEXGW---DTPIHVDAASGGF 902
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYFE E + V +    +++++P    + VDENTI    ILG+T TG  E+V+   D+L++ + +   W   D PIH D ASGGF
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGF 283          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.467e-46
Identity = 94/233 (40.34%), Postives = 143/233 (61.37%), Query Frame = 3
Query:  204 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASG 896
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y++ +++ V +++ +  ++  K  +LVDE TI V  ILG T TG+F+D++L  + +   NE       IH+D ASG
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASG 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.178e-46
Identity = 94/247 (38.06%), Postives = 149/247 (60.32%), Query Frame = 3
Query:  168 TETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y++ +++ V +++ +  +N  + ++ VDE TI V  ILG T TG ++D+   ++ L + N +  +   IHVDAASGGF
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGF 248          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.375e-46
Identity = 93/233 (39.91%), Postives = 142/233 (60.94%), Query Frame = 3
Query:  204 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASG 896
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   + + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y++ +++ V +++ +  ++  K  ELVDE TI +  ILG T TG+F+D+ L  + +   NE       IH+D ASG
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASG 249          
The following BLAST results are available for this feature:
BLAST of CK933254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO574.057e-5745.49Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADA_DICDI1.180e-5645.60Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCEB_ECOL61.542e-5645.08Glutamate decarboxylase beta OS=Escherichia coli O... [more]
GADB_DICDI1.105e-5445.45Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_LACLM7.918e-5341.04Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA7.918e-5341.04Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_YEAST1.446e-4643.17Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEC_LISMO2.467e-4640.34Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN7.178e-4638.06Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEC_LISIN9.375e-4639.91Probable glutamate decarboxylase gamma OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_G07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933254 ID=CK933254; Name=CK933254; organism=Citrus sinensis; type=EST; length=904bp
GGGGGAAGAGTGAAGAGCTGAGTTGCCATCAAAAGTCAAAACTCACTCAC
TCACTCACTCTCAATCACTCTCTTTCCTTTGTATCTCAGCAATTTCTATT
CATTTCTCTCAGACTCAAGAGTCTCTCTTCTCTGCACAAAACAAAAACAA
AAATGGTGATTTCAACAACAGAAACAGACTCCAGGGAGATTTTGAACTCC
ACATTTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCC
AGATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGC
TGATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACT
TGGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAA
CTATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGT
GTGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAG
ACTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGC
TGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCA
AACCCTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGC
TGGGAGAAATTTGCGAGGTACTTTGAGGCTGAGCTGAAGGAGGTGAAACT
GGAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAG
ATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGA
GAATTTGAGGATGTTAAGCTTTCTCATGACCTCCTCACCAAAAAGAATGA
GGAGNCCGGTTGGGACACCCCCATTCATGTTGATGCTGCTAGCGGCGGAT
TTAT
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