CK933262

Overview
NameCK933262
Unique NameCK933262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933262 vs. ExPASy Swiss-Prot
Match: RL35_CAEEL (60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = 3
Query:   66 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            M ++K   LR + K  L  +L + K ELA LRV+KVTGGA +KLSKI+VVR +IA++LTVI+Q QK  LR+ Y + K+ P+DLR KKTRAIRRRLT H+ SL++ +++ +     +RK+A+K
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVK 122          
BLAST of CK933262 vs. ExPASy Swiss-Prot
Match: RL35_THEPA (60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.191e-24
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 3
Query:   66 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 434
            M +++V ELR KS  +LL  L DLK ELA  RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+ V
Sbjct:    1 MEKLRVFELREKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYALLV 123          
BLAST of CK933262 vs. ExPASy Swiss-Prot
Match: RL36_THELE (60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   66 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 428
            M +++V ELR KS  +LL  L DLK ELA  RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:    1 MEKLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYAL 121          
BLAST of CK933262 vs. ExPASy Swiss-Prot
Match: RL35_DICDI (60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   72 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAY--KNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            + K  ELRTK+KT LL  LK+L+ EL+ LRVA+V    P+KL+KI  VR +IA+VLTV +Q QK  LR  Y  K+   +P DLR KKTRAIRRRLT  Q+ + T R  K    FP R +A+K
Sbjct:    4 KTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRVFAVK 125          
BLAST of CK933262 vs. ExPASy Swiss-Prot
Match: RL35_BABBO (60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 3
Query:   66 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 434
            M ++KV+ELR K+  +LL QL+DLK E A +RV KVT  + +KLS+I V+R +IA+VLTV +Q+++   R+ Y     +PL++RPK TRA RR LT  Q  LKT +++K+   FP RKYA+ V
Sbjct:    1 MEKIKVYELRNKTDAELLKQLEDLKQEYASMRVQKVTVTSTSKLSQIGVIRKAIAKVLTVYNQRKREEARKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRKYALLV 123          
BLAST of CK933262 vs. ExPASy Swiss-Prot
Match: RL35_THEAN (60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.524e-24
Identity = 64/134 (47.76%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   27 LHTLTERVE*PAAMARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 428
            LH  TE++         +V ELR KS  +LL  L DLK ELA  RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   16 LHNFTEKL---------RVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYAL 140          
The following BLAST results are available for this feature:
BLAST of CK933262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_CAEEL9.740e-2751.6460S ribosomal protein L35 OS=Caenorhabditis elegan... [more]
RL35_THEPA1.191e-2450.4160S ribosomal protein L35 OS=Theileria parva GN=RP... [more]
RL36_THELE2.031e-2450.4160S ribosomal protein L35 OS=Theileria lestoquardi... [more]
RL35_DICDI3.464e-2452.4660S ribosomal protein L35 OS=Dictyostelium discoid... [more]
RL35_BABBO3.464e-2448.7860S ribosomal protein L35 OS=Babesia bovis GN=RPL3... [more]
RL35_THEAN4.524e-2447.7660S ribosomal protein L35 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_F11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933262 ID=CK933262; Name=CK933262; organism=Citrus sinensis; type=EST; length=656bp
GGGGCAATGACATAAGTCTTCTTCTTCTTCACACACTGACAGAAAGAGTC
GAATAACCAGCAGCCATGGCAAGAGTCAAGGTTCATGAACTGCGGACCAA
ATCCAAGACGGATTTATTGAACCAGTTGAAAGATCTGAAAGCGGAGCTCG
CTCTTCTGCGGGTCGCCAAAGTCACCGGTGGCGCGCCCAATAAGCTTTCC
AAAATTAAAGTGGTGAGGCTGTCGATTGCCCAAGTGTTGACTGTGATATC
GCAGAAGCAGAAGGCGGCTTTGAGAGAAGCATATAAGAACAAGAAGTTTT
TGCCACTTGATCTTCGTCCCAAGAAGACCAGAGCTATCCGAAGGCGCCTC
ACCAAGCATCAGGCATCTTTGAAGACTGAACGTGAGAAGAAGAGGGAAAT
GTACTTTCCAATGAGGAAATACGCCATTAAGGTGTAAGATCAAATTGAAT
TGGGAAGGAGACAATGATGTTAAACTTGTCAAATGCTATCAAAGATTTTT
TTGTTCTGTTGAATTTTAAGTTTAGTTTTTCTTATCTTCCATTTGTGTTA
CTAGTATGGATTTTGGATTTCGATGAGAGTATTCAGGTTTTAATTCTATA
TACTTGAAGGTTTGGTCTCATTTCATTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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