CK933273

Overview
NameCK933273
Unique NameCK933273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 613
            K +  P+R +EK R+++E  L   YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L V + LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:    9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22
Identity = 57/152 (37.50%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 562
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+V  FLERRLQT+V++ G AKS + AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22
Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            K +  PR P+EK+R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY  L +    LD VL+LTV N L+RRLQT+VFK  +A S   AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD---EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            K ++ P+RP+E  R++ E RLV EYGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL V   L+RRLQT V++ G A+S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 535
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 607
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTV + LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P ++V  + +  I ++  SPF   G P R+
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 535
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 577
            KP+R +  + L +ELRL+GEYGLR K+ELW  +  L  I++ AR++L+     P  I  GEA  R   R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH AR LI   HI +    V  P ++V  + +  I F+ TS
Sbjct:   15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22
Identity = 58/160 (36.25%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            K+F+ PR P+++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L   N LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.253e-21
Identity = 59/145 (40.69%), Postives = 89/145 (61.38%), Query Frame = 2
Query:  131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 559
            KP++ + K+ L  EL+LVGEYGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
The following BLAST results are available for this feature:
BLAST of CK933273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_METLZ6.645e-2336.3130S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_KORCO1.134e-2237.5030S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_THEVO1.480e-2240.1330S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]
RS4_METHJ1.480e-2239.4930S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_PYRAE3.298e-2243.0730S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_PYRKO4.307e-2239.6330S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_PYRCJ4.307e-2243.8030S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_CALMQ4.307e-2244.0830S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_METBF7.347e-2236.2530S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_PYRIL1.253e-2140.6930S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_D09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933273 ID=CK933273; Name=CK933273; organism=Citrus sinensis; type=EST; length=769bp
GGGGGCCTCTTCACGCCGTTTGCTTAGGCTTTTACAAAGATCGCACAGGG
GGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGTTTCA
TTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGA
GAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGGGCTTC
GCTGCAAGAGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGA
AATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTAT
TTTTGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTTCTTGG
AAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGGGAAC
TTTCTTGAGCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAA
GTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTG
GAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAG
AAGCACATTGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGG
AAGAGTGAAGAGAAGGAACATTAGGGCTGCTGCCAAGAAGGCCGCAGGTG
GAGATGGAGATGAAGAGGATGAAGAATAAATTACCTTGTGTGAGCAGATA
GTTGTTTTATGGTTACAGTAGGAACTCTGGCTGAANNNNGCAAATCGACT
TATCTTCTCTTAAGTTATA
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