CK933273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23 Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 613 K + P+R +EK R+++E L YGLR KRE+WR L + R+ AR++L + + P+ I + L+ + RYG L +D +L+L V + LERRLQT+V++ G+A+S AR LI HI + Q V++PS++V + + I + TS G G +R Sbjct: 9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22 Identity = 57/152 (37.50%), Postives = 92/152 (60.53%), Query Frame = 2 Query: 107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 562 R + K +++P +P+++ L+ RL G YGLR KRELWR+ + + R AR LL + ++ E +++++ G L + LD +L L+V FLERRLQT+V++ G AKS + AR LI HIRV + + PS++V+++ + IE Sbjct: 5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22 Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580 K + PR P+EK+R+D E +++ +YGL+ KRE+WR + LS IR+ AR L L + N ++ + E +++R+ RY L + LD VL+LTV N L+RRLQT+VFK +A S AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.480e-22 Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD---EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580 K ++ P+RP+E R++ E RLV EYGLR KRE+W + AL + R AAR+++ L + R + + L+ + R G L E+ + +D VLAL V L+RRLQT V++ G A+S AR I HI +G + V IP + V Q+ I ++ +SP Sbjct: 9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.298e-22 Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2 Query: 131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 535 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 607 K ++ P P+ KERLD E L Y L+ K+ELWR + L R AR LL K E + LL+R++R G L + LD VL+LTV + LERRLQT+V++ G+A+++ AR LI HI V Q++ P ++V + + I ++ SPF G P R+ Sbjct: 9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 2 Query: 131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 535 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 2 Query: 131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 577 KP+R + + L +ELRL+GEYGLR K+ELW + L I++ AR++L+ P I GEA R R+ R G + + LD VLAL V LERRLQTLV++ GMA+SIH AR LI HI + V P ++V + + I F+ TS Sbjct: 15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.347e-22 Identity = 58/160 (36.25%), Postives = 91/160 (56.88%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R EG E +L ++ RYG ++ S +D +L+L N LERRLQT V + G+A+++ AR I HI + + +P +V + + HI + TSP Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.253e-21 Identity = 59/145 (40.69%), Postives = 89/145 (61.38%), Query Frame = 2 Query: 131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 559 KP++ + K+ L EL+LVGEYGLR K+ELW + L I AR LL++ +E+ P + ++++ GF+E+ LD +L+L V LERRLQT+V++ G+AKSI+HAR L+ H+ V + V P F+V D + I Sbjct: 15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155 The following BLAST results are available for this feature:
BLAST of CK933273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933273 ID=CK933273; Name=CK933273; organism=Citrus sinensis; type=EST; length=769bpback to top |