CK933359

Overview
NameCK933359
Unique NameCK933359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-23
Identity = 52/128 (40.62%), Postives = 85/128 (66.41%), Query Frame = 3
Query:   72 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDEN-CQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 452
            SG+AV D+    F +LK  + Y+FI++ + + + +++V++     D Y+ F   LP ++C YAVYDF++    N  ++SKI+F  WSPDT+ VRSKM+YASSKD  +R L+G+  ++Q TD +E+  +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAEQD-YDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 3
Query:   72 SGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 452
            SG+AV D+    F +LK  + Y+F++F +   +  ++V++     D Y+ F   LP D+C YAVYDF++ ++    ++SKI+F  WSPDT+ +RSKM+YASSKD  +R L+G+  ++Q TD +E+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 53/131 (40.46%), Postives = 85/131 (64.89%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVM 458
            +SG+    +C  KF ELK  +   ++++ + E ++ +VV K  E  D +++F A LP  +CR+AVYDF+F +      ++K+ FI WSPD + V++KMI+ASSK+  +R LDGI  E+QATD +E+  D +
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDAL 131          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.827e-23
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEM 443
            +SG+A+  +C   F +LK  R Y  I+++I +  K+++V+       S++ FT  LP +ECRY V D+ +  +E  QKSKI F+AW PDT+ ++ KM+  SSKD  ++   GIQVE+Q TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 49/141 (34.75%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPA---DECRYAVYDFDFV-----TDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 467
            ASG+ V D CK  + E+K  + +R+++F I + +KQ+ VE + + +  Y+ F   +      ECRY ++DF+++     T E+ +K K+  ++W PDT+KV+ KM+Y+SS D  K+ L G+Q  +QATD +E   + +  +
Sbjct:    2 ASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRD-EKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 3
Query:   93 DCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADEC-----------RYAVYDFDF-VTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLD 452
            DC   F +LK  + Y+FIV+K+ +  K++V++K  E  D +E+F  +L                RYAVYDF++ +   +  ++KI FIAWSPD + ++ KMIYASSK+  KR L GI  ELQA D  ++  D
Sbjct:    2 DCITAFNDLKLNKKYKFIVYKLSDDYKEIVIDKASESRD-WEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.064e-16
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 467
            ASG+ V+D+    F E+K          K+  + ++F +   +K+++VE+        +GE   D Y  F   LP D+CRY +YD  + T E+ +K  ++FI W+PD + ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVQDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 467
            ASG+ V+D+    F E+K          K+  + ++F +   +K+++VE+        +GE   D Y  F   LP D+CRY +YD  + T E+ +K  ++FI W+PD + ++SKMIYASSKD  K++  GI+ E Q       GLD ++ R
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVPDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.816e-16
Identity = 51/152 (33.55%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 470
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q++VE+        +G+   D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ RS
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CK933359 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.816e-16
Identity = 51/152 (33.55%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   69 ASGMAVDDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVVVEK--------LGEP-SDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRS 470
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q++VE+        +G+   D Y +F   LP ++CRYA+YD  + T E+ +K  ++FI W+P+++ ++SKMIYASSKD  K++  GI+ E Q       GLD ++ RS
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
The following BLAST results are available for this feature:
BLAST of CK933359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COFI_KLULA1.174e-2340.63Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_ASHGO2.003e-2339.84Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COFI_CRYNE3.416e-2340.46Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COF1_DICDI5.827e-2340.80Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
CADF_DROME1.215e-2034.75Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COFI_GIBZE6.667e-1940.15Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_XENLA1.064e-1635.10Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF2_XENTR1.390e-1635.10Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
COF2_PIG1.816e-1633.55Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE1.816e-1633.55Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933359 ID=CK933359; Name=CK933359; organism=Citrus sinensis; type=EST; length=844bp
GGGGACTATAGAATCCCTAGATTTTCTCTCAATTTCCCTCATTTTCTCTC
CAGAAAATGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTGCAA
GCTGAAGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAGTTT
TCAAGATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGTGAA
CCATCTGATAGTTATGAGAATTTTACTGCTAGCCTCCCAGCGGATGAGTG
CCGATACGCTGTCTATGATTTTGACTTTGTGACTGATGAGAACTGCCAGA
AGAGCAAGATTATTTTCATTGCATGGTCCCCCGACACCTCAAAGGTGAGA
AGCAAGATGATTTATGCTAGCTCCAAGGACAGGTTCAAGAGAGAATTGGA
TGGAATTCAGGTAGAGTTGCAGGCTACTGATCCTACTGAGATGGGTCTTG
ATGTCATGAGAAGCCGTTCGAATTAAATTTTAGACTTGCCTATGGTGCAA
TGGAAAGCCCATACTATATTGTTCACTTAAATGTAATGTCTATATCTTTT
ATGACTTATAACTTGCTTTGCTATCGGCTTGTGGTCGGAGTTAAATACTT
TTTTAATTTGTCTTCCCATTTGTTATATCTGTGGATTAATAGGGTGAGTA
TCCCCATATGGTGTGATGTTAATTACAGACTAATATATAATGGTTTGTGG
GGGGTACATATCTCATTTTAGCTTTGATTGCTTGCAACTGGGTTTTTGGC
AGTAGTATCAGTGTAATACATCAGTTACATGATTTGTTATGGATGCAATT
TCTTACATGAGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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