CK933374

Overview
NameCK933374
Unique NameCK933374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933374 vs. ExPASy Swiss-Prot
Match: EIF3E_CHAGB (Eukaryotic translation initiation factor 3 subunit E OS=Chaetomium globosum GN=INT6 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.174e-43
Identity = 93/265 (35.09%), Postives = 155/265 (58.49%), Query Frame = 3
Query:   51 NFNATMATYDLTQRIAPNLDRHLVFPLLEFL------QERQMYPDE----QILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQXEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDFCHQDKYLNAIQPMLP 815
            N +A ++ YDL  ++A NLDRH++FPLLEF       +E  +  DE    +I ++K  LL  +NM DY  +++  L   E+ P +  +++ +V ++L+ LE++ + I+  L+  +   +LR+ D+  NL+ L   +Q+  D   AL+     Q+ CGNY  A++ LY++R L T++++   A WG++A EIL  NW+ A+EEL +++E + D K   +PL Q+Q R  L HW+LF  FN +  R  I++      Y+N IQ   P
Sbjct:    8 NGDAAVSDYDLMLKLAQNLDRHMIFPLLEFSAGQLVDEESGVVRDEAKAREITQAKYSLLKNSNMTDYVANLYCELAGVEEPPAEFADKKQKVFSQLQNLEQQTSKIIELLEREDVVNNLRS-DKVANLEFLKREHQVTMDMVNALFDLGNLQYSCGNYGDASEMLYRFRVLSTDNDKVAFATWGRLACEILTMNWESAMEELVKVRETI-DTKLSQNPLAQLQHRTALTHWALFPLFNFEKAREPILELFFNAGYINTIQANCP 270          
BLAST of CK933374 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEEL (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis elegans GN=eif-3.E PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.193e-41
Identity = 90/257 (35.02%), Postives = 157/257 (61.09%), Query Frame = 3
Query:   66 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYN-----LQMLNDRYQIGPDQXEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIID-FCHQDKYLNAIQPMLP 815
            M+T+DLTQR+AP LD HL+ PLLEF++ R +Y ++ + +   +LL KTNM+D  ++     Y+ + +P  +  ++ +++     L+ +   +V+ L+ P   +++  N++  +     L+ L   +    D  + L++Y+KF +ECGNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  + D   F +    +  R WLMHW+LF+++N+  GR  II+ F +Q  YLNAIQ + P
Sbjct:    1 MSTFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE----TYNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIP-EVKEMMDNNRERDGNVRILEHLTQNHNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYI-DANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAP 251          
BLAST of CK933374 vs. ExPASy Swiss-Prot
Match: EIF3E_MONBE (Eukaryotic translation initiation factor 3 subunit E OS=Monosiga brevicollis GN=13685 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.574e-36
Identity = 83/251 (33.07%), Postives = 140/251 (55.78%), Query Frame = 3
Query:   66 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQXEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIID-FCHQDKYLNAIQPMLP 815
            MA +DLTQ I  NLD HL+ PLL+   +  +Y +  + ++K+++L++T +++ A+++  +   TE   +D+  R   +    K  E++  P+    +N      + A     +L    + Y    +  + LY  +KF F+ G Y  A   LY YRA+ T+ + + +ALWGK+AA IL  NW  A E++  L E +D  K+  + + Q+Q R WL+HWSLF+FFN  +G   I+D F +++   NA+Q + P
Sbjct:    1 MAAHDLTQAICQNLDPHLILPLLDHCVDLDIYNEADLKRAKMQVLSRTRLIEQALELADA---TEK--KDLDARMRSISEEEKTWEKQLEPVFEMFENDEVLSIIEATKNKDSLLSELEPYGFTENTADLLYHGSKFYFDRGQYDLAHGLLYNYRAVSTDDKLKFTALWGKLAAAILSGNWQTAQEDMYLLLEYIDGGKNELTAVEQLQQRNWLLHWSLFVFFNQPDGPDGIVDLFMNKETCTNAMQTIAP 246          
BLAST of CK933374 vs. ExPASy Swiss-Prot
Match: EIF3E_DICDI (Eukaryotic translation initiation factor 3 subunit E OS=Dictyostelium discoideum GN=eif3e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 77/294 (26.19%), Postives = 150/294 (51.02%), Query Frame = 3
Query:   75 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFL----QNPNSFQDLRANDQHYNLQMLNDRY----------------------------------------QIGPDQXEALYQYAKFQFECGNYSGAADYLYQYRALCT---NSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDFCHQDKYLNAIQPMLP 815
            YDLT++I   LD H++ PL+ +L++ Q Y + +I K+  ++L++T   DYA++ ++S+   +  P  +  ++ E+V  L  L+E+ + +  ++    Q     ++L+   +    +   D+                                         +I P+  +++Y+++K  FE G Y  A ++L  +  L     N ++RLSALWG + ++IL  NW  A+ +++ L++++D   S  +P+ Q+  R WL+H +LF++F +   R+ ++D   +DKYLNAIQ   P
Sbjct:    3 YDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESIGR-DTAP--LQAKKQELVGELNKLKEQCSFVTQYIESKKQQKEQQKELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSAREHLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQID---SNGTPVEQLGQRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQTTCP 290          
BLAST of CK933374 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEBR (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis briggsae GN=eif-3.E PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.263e-23
Identity = 54/127 (42.52%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  441 DQXEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIID-FCHQDKYLNAIQPMLP 815
            D  + L++Y+KF +ECGNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  + D   F +    +  R WLMHW+LF+++N+  GR  II+ F +Q  YLNAIQ + P
Sbjct:    5 DMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYI-DANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAP 130          
The following BLAST results are available for this feature:
BLAST of CK933374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_CHAGB2.174e-4335.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEEL1.193e-4135.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MONBE2.574e-3633.07Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DICDI8.866e-2926.19Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEBR3.263e-2342.52Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_D07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933374 ID=CK933374; Name=CK933374; organism=Citrus sinensis; type=EST; length=817bp
GGGGCTACAGAAGAACAGCAGCAGCAGACGCCGCTGCCGCCGAGGAACGA
AATTTCAACGCGACAATGGCGACGTACGATTTGACACAGAGAATCGCGCC
GAATCTGGACCGGCATCTGGTGTTTCCGCTGCTGGAGTTTCTCCAAGAGC
GGCAGATGTACCCGGACGAGCAGATTCTGAAATCGAAGATAGAGCTCTTG
AACAAGACGAACATGGTCGACTACGCGATGGACATCCACAAGAGCCTCTA
CCACACCGAAGACGTCCCGCAGGATATGGTCGAGCGGAGGGTCGAGGTCG
TCGCTCGTTTGAAGGCCCTGGAGGAGCGCGCCGCCCCGATCGTTTCGTTC
TTGCAGAACCCTAACTCCTTTCAAGATTTGAGAGCTAATGACCAGCACTA
CAATTTGCAGATGCTTAACGACCGTTACCAGATTGGCCCGGATCAGNNCG
AGGCGCTTTATCAGTATGCCAAATTTCAGTTTGAATGTGGGAACTACTCT
GGGGCTGCTGACTATCTGTACCAGTACAGGGCCTTGTGCACAAACAGTGA
AAGGAGGCTGAGTGCATTATGGGGAAAAATGGCGGCTGAGATATTGATGC
AGAATTGGGATATTGCTCTTGAAGAACTTAATCAATTAAAGGAAAAAGTT
GATGACCCAAAGAGTTTCACTTCACCTTTAAATCAGATGCAGAGTAGGAT
ATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAATCATGATAATGGAA
GAACACTGATCATTGACTTTTGTCATCAGGATAAGTATCTAAATGCCATT
CAACCAATGCTCCCCAT
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