CK933378

Overview
NameCK933378
Unique NameCK933378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.507e-42
Identity = 57/93 (61.29%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  195 RPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVI
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVI 94          

HSP 2 Score: 79.337 bits (194), Expect = 6.507e-42
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 664
            P H  IR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:   98 PFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 158          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.008e-35
Identity = 45/82 (54.88%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  228 GYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            GYKAKQ                       YGKP + GV QLKF RS +SV EERAGR  G LRVLNSYW+ EDSTYK+FEVI
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVI 82          

HSP 2 Score: 81.2629 bits (199), Expect = 3.008e-35
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 664
            P H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:   86 PFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 146          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.722e-34
Identity = 72/123 (58.54%), Postives = 84/123 (68.29%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINE 443
            MGAY +V+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ                       +GKP NQG+ QLKFQRS RS AEER  R+ GGLR+LNSYWI +
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITK 123          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.051e-33
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MG Y ++ E W++ +   +R L   R  ++R+ P++VR+ RPTR D+AR LGYK KQ                         KP   GV ++   +S + +AEERA RK   + VLNSYW+ ED  +K++EVI
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKN--SKKPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVI 131          

HSP 2 Score: 68.5514 bits (166), Expect = 2.051e-33
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 655
            P H AI+ DP++NWLC   H+ R  RGLTSAGKK RGLR KG    K RPS RA  +R
Sbjct:  135 PYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKGIGAEKVRPSIRAHGRR 192          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.884e-32
Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVIWLILLIMPSV 503
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA +K   + VLNSYW+ +D   K++EVI L+    PS+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKH--SKKPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVI-LVDPCQPSI 140          

HSP 2 Score: 63.929 bits (154), Expect = 4.884e-32
Identity = 33/58 (56.90%), Postives = 36/58 (62.07%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 655
            P   +I+ND   NWLC   HK R  RGLTSAGKK RGL  KG    KARPS RA  K+
Sbjct:  135 PCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGAEKARPSVRANGKK 192          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.103e-31
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MG Y ++ E W+  +   +  L + R  ++R+ P +VRV RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L VLNSYW+ ED  YK+FEVI
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVI 131          

HSP 2 Score: 62.7734 bits (151), Expect = 3.103e-31
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 643
            P H  I++DP+I W+    HK R  RGLTSAG+K RGLR KG    K RPS RA
Sbjct:  135 PHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGAEKVRPSVRA 188          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.103e-31
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MG Y ++ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L VLNSYW+ ED  YK+FEVI
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVI 131          

HSP 2 Score: 63.1586 bits (152), Expect = 3.103e-31
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 643
            P H  I++DP+I W+    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:  135 PHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSVRA 188          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.040e-31
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVIWLILLIMPSVMTQE 515
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L VLNSYW+ +D   K++EVI L+    PS+ + +
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKH--SKKPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVI-LVDSCHPSIKSDK 144          

HSP 2 Score: 60.8474 bits (146), Expect = 4.040e-31
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 2
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 655
            H +I++D   NWLC   HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:  137 HPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGTEKVRPSVRANSKK 192          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.040e-31
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVIWLILLIMPSVMTQE 515
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L VLNSYW+ +D   K++EVI L+    PS+ + +
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKH--SKKPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVI-LVDSCHPSIKSDK 144          

HSP 2 Score: 60.8474 bits (146), Expect = 4.040e-31
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 2
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 655
            H +I++D   NWLC   HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:  137 HPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGAEKVRPSVRANSKK 192          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.852e-31
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MG Y ++ E W+  +   +  L + R  ++R+ PS+VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L VLNSYW+ ED  YK+FEVI
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVI 131          

HSP 2 Score: 60.8474 bits (146), Expect = 6.852e-31
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 643
            P H  I++DP+I W+    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:  135 PHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
The following BLAST results are available for this feature:
BLAST of CK933378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK6.507e-4261.2960S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_PIG3.008e-3554.8860S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15_QUESU2.722e-3458.5460S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_METJA2.051e-3336.8450S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_METM54.884e-3234.9750S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_THEON3.103e-3137.5950S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_THEGJ3.103e-3136.8450S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_METM74.040e-3135.3750S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM64.040e-3135.3750S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_PYRHO6.852e-3137.5950S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_B12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933378 ID=CK933378; Name=CK933378; organism=Citrus sinensis; type=EST; length=883bp
GGGGATAGCTCTCTCATTGTAAGCGAAAACCCTAGACGCACGGATACTGC
GCATCTCAGCTCAGCTCAGAGCCAATGGGGGCTTACACGTTCGTGTCGGA
GCTATGGAGGAAGAAGCAGTCAGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGTTGGGAGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCC
ACTCGACCTGACAAGGCTCGACGCTTGGGTTACAAGGCCAAGCAGGGTTA
TGTTGTTTATCGTGTGCGGGTAAGGCGCGGTGGTCGGAAGAGGCCTGTTC
CCAAGGGCATTGTGTATGGTAAACCCACAAACCAGGGTGTTACTCAACTG
AAGTTTCAGCGCAGCAAGAGGTCTGTTGCAGAGGAGCGTGCCGGTCGTAA
GTTGGGAGGTCTTAGGGTTCTCAATTCTTACTGGATCAATGAGGACTCCA
CTTATAAGTACTTTGAGGTGATTTGGTTGATCCTGCTCATAATGCCATCC
GTAATGACCCAAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGG
GAACTCCGTGGTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGG
AAAAGGACACTTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGA
AGAGAAACAATACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGG
TTTTGATGTTTATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGT
TGCCATTTTGAGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATT
TTGAAACCGTACATTCTAAATTAAGACATTTGTGTTTCTTGAGTNCAAAA
AAAAAAGAAAAAAAAAAAAAAAAAAANNNNNNA
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