CK933378

Overview
NameCK933378
Unique NameCK933378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.474e-23
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 3
Query:   81 AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            AY+++ + W+      +  L   R  E+R+ P++V++ RPTR D+AR LGYKAKQ                         K  + G+  L  + S + +AE RA RK   + VLNSYW+ +D  +K++E+I
Sbjct:    5 AYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEII 133          

HSP 2 Score: 48.9062 bits (115), Expect = 5.474e-23
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 655
            P H +I +D  ++W+    H+ R  RGLTSAGKK RG R KG    K  PS +A  +R
Sbjct:  137 PHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHDRR 194          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.241e-23
Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            +  Y ++ + W+ K  D  R + R R  E+R+ P+I R+ RPTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L VL SY++ ED  YKY+EVI
Sbjct:    3 LSMYHYIEQTWQNK--DWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVI 131          

HSP 2 Score: 45.8246 bits (107), Expect = 9.241e-23
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 2
Query:  485 AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRR 640
            +H  IR+DP + WL + V++ R  RGLTSAG+K RGL   RG KG +  K +  ++
Sbjct:  136 SHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGLTKSRGLKGTVQRKWKKKQK 191          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.245e-23
Identity = 45/133 (33.83%), Postives = 64/133 (48.12%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            +  Y ++   W  ++       QR+  W  R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L VL SY++ ED  YKY+E++
Sbjct:    3 LSMYHYIENTWNSEEWKKSVLRQRLIKW--RKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIV 131          

HSP 2 Score: 51.2174 bits (121), Expect = 9.245e-23
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLR 598
            P+H  I++DP+  WL +P +++R  RGLTSAGKK RGLR
Sbjct:  135 PSHPVIKSDPKHKWLQDPSNRNRVFRGLTSAGKKVRGLR 173          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.269e-23
Identity = 47/132 (35.61%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   84 YTFVSELW-RKKQSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            Y +V E W R  +SDV   L  R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                     +   +    G       +S + +AEERA  +   + VLNSYW+ +D   KY+EVI
Sbjct:    6 YAYVREAWARPDKSDVKALLWDRMQVW--RREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVI 133          

HSP 2 Score: 54.299 bits (129), Expect = 9.269e-23
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 2
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 643
            H +I++D  + WL NP H+ R  RG TSAG+K RG+R +G    K RPS R+
Sbjct:  139 HPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGMRTRGRGTEKTRPSIRS 190          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.206e-22
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 3
Query:   84 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            Y +V + W+      +  L+  R   +R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA RK   L VLNSYW+ ED  +K+FEVI
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVI 133          

HSP 2 Score: 51.2174 bits (121), Expect = 1.206e-22
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 643
            P H  I++D  +NW+C+   + R  RG TSAG+K RG+  +G    K RPS RA
Sbjct:  137 PHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKTRPSIRA 190          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.498e-22
Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 3
Query:   84 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            Y  + E W+  +   +  +++ R   +R  PS+VR+  PTR D+AR LGYK+K                      I+ G+ P      +L  ++S + +AEERA  K   L VLNSY++ ED  YKY+EVI
Sbjct:    7 YQEIREEWKSLKKSEIYDVEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVI 134          

HSP 2 Score: 50.447 bits (119), Expect = 4.498e-22
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 2
Query:  485 AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 643
            +H  I NDP I+W+  P +  R  RGLTSAG K RGLR       K+RPS RA
Sbjct:  139 SHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRA 191          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.611e-19
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  129 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 245
            MRF+QRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 41          

HSP 2 Score: 36.5798 bits (83), Expect = 2.611e-19
Identity = 19/29 (65.52%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  301 PRALCMVNPQTRVLLN*SFSAARGLLQRS 387
            P+ LCMVNPQTR LLN S   A  LL RS
Sbjct:   60 PKVLCMVNPQTRELLNSSSRGATVLLLRS 88          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.031e-18
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 3
Query:   84 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVIWLILLIMPSVMTQELIGY 527
            Y +V + W+K     ++ L   R   +R+  ++VR+ RPTR D+AR LGYKAKQ                      + G+ TN+ G+ +    ++ +S+AEERA  +   + VLNSYW+ +D   KY+EVI L+    PSV+  + + +
Sbjct:    6 YGYVRDAWKKPAESGVKKLLWERMQTWRRQGAVVRLERPTRIDRARELGYKAKQ---GIIVVRASIRRGGRRKSRYIRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVI-LVDRNSPSVLADKNLAW 150          

HSP 2 Score: 32.7278 bits (73), Expect = 2.031e-18
Identity = 17/43 (39.53%), Postives = 24/43 (55.81%), Query Frame = 2
Query:  506 DPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 634
            D  + W+ +   + R  RG TSAG++ RGL  +G    K RPS
Sbjct:  145 DKNLAWVADT--RGRVFRGKTSAGRRARGLHNRGTGTEKCRPS 185          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 52/160 (32.50%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVIWLILLIMPSVMTQELIGYAILSISTGN 554
            M  Y +V E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA ++   + VLNSYW+ +D   K++E+I L+    PS+   +   +    +STGN
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKH--SKKPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEII-LVDPCHPSIKNDKSYSW----LSTGN 153          
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15E_NANEQ (50S ribosomal protein L15e OS=Nanoarchaeum equitans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.661e-17
Identity = 44/133 (33.08%), Postives = 61/133 (45.86%), Query Frame = 3
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MG Y +V  L+ K   + +  L + R  ++R+ P IV V RPTR D+AR LGYK                        I  G+             + + +AEERA R    + VL SYW+ ED  YK++EVI
Sbjct:    1 MGLYQYVRALY-KDPKEFLGELYKQRIQQWRREPPIVEVERPTRIDRARALGYKP---LPGIKIVRVRVRKGTRKREEIKGGRRPKAEYRIRPLGVNLQWIAEERANRLHRNMEVLGSYWVGEDGLYKWYEVI 129          

HSP 2 Score: 45.4394 bits (106), Expect = 1.661e-17
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 2
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 652
            P +  I N P   WL     + R  RG TS+ +K+RGLR  G    K RPS+RA +K
Sbjct:  133 PFNPNIYNRPEYVWLLQKNQRGRVFRGKTSSARKFRGLRNGGLGAEKVRPSKRANFK 189          
The following BLAST results are available for this feature:
BLAST of CK933378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_UNCMA5.474e-2332.8250S ribosomal protein L15e OS=Uncultured methanoge... [more]
RL15E_SULAC9.241e-2336.8450S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15E_SULSO9.245e-2333.8350S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_METB69.269e-2335.6150S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_METMA1.206e-2235.1150S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_THEVO4.498e-2234.3550S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15_BRANA2.611e-1989.7460S ribosomal protein L15 (Fragment) OS=Brassica n... [more]
RL15E_METLZ2.031e-1832.8950S ribosomal protein L15e OS=Methanocorpusculum l... [more]
RL15E_METMP2.094e-1832.5050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_NANEQ1.661e-1733.0850S ribosomal protein L15e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_B12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933378 ID=CK933378; Name=CK933378; organism=Citrus sinensis; type=EST; length=883bp
GGGGATAGCTCTCTCATTGTAAGCGAAAACCCTAGACGCACGGATACTGC
GCATCTCAGCTCAGCTCAGAGCCAATGGGGGCTTACACGTTCGTGTCGGA
GCTATGGAGGAAGAAGCAGTCAGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGTTGGGAGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCC
ACTCGACCTGACAAGGCTCGACGCTTGGGTTACAAGGCCAAGCAGGGTTA
TGTTGTTTATCGTGTGCGGGTAAGGCGCGGTGGTCGGAAGAGGCCTGTTC
CCAAGGGCATTGTGTATGGTAAACCCACAAACCAGGGTGTTACTCAACTG
AAGTTTCAGCGCAGCAAGAGGTCTGTTGCAGAGGAGCGTGCCGGTCGTAA
GTTGGGAGGTCTTAGGGTTCTCAATTCTTACTGGATCAATGAGGACTCCA
CTTATAAGTACTTTGAGGTGATTTGGTTGATCCTGCTCATAATGCCATCC
GTAATGACCCAAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGG
GAACTCCGTGGTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGG
AAAAGGACACTTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGA
AGAGAAACAATACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGG
TTTTGATGTTTATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGT
TGCCATTTTGAGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATT
TTGAAACCGTACATTCTAAATTAAGACATTTGTGTTTCTTGAGTNCAAAA
AAAAAAGAAAAAAAAAAAAAAAAAAANNNNNNA
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