CK933465
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: RIR2_HELPY (Ribonucleoside-diphosphate reductase subunit beta OS=Helicobacter pylori GN=nrdB PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15 Identity = 75/304 (24.67%), Postives = 123/304 (40.46%), Query Frame = 3 Query: 81 SIPEEPLLAPNP-DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQTAIENIHSEMYSLLLETYIKDSNE-----------KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWME 935 S+ E + NP F + I+Y ++K A+ W AEEV ++ D R + L+A+EK LA D + NL + E Q E +HS Y++++E+ ++ E K++ + + +AK T E + L A +EGI+F F + L + G M G I RDE H + + LR + ++ V + K+AVEIE + ++G+ L+ QYI+F+AD V +P W+E Sbjct: 16 SVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKRDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPT--------EENILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYGVQHPIKWVE 311
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: YVFB_VACCC (Uncharacterized 8.3 kDa protein OS=Vaccinia virus (strain Copenhagen) GN=F ORF B PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.685e-14 Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = -2 Query: 548 ISTASFTNAFTLSSLSFVLNKLYNRHAKSQWRPSSREINSFENVNPGINPRFLSQNIAQKLPEKKIPSTQANAINLS 778 + TAS T+SSL L +HAKSQ RPSS I+S ENV+PGI PRFLSQN+ PEKKIPST A AI+LS Sbjct: 1 MDTASVIIDLTVSSLGGYNKCLNIKHAKSQCRPSSLLISSLENVSPGIRPRFLSQNMEANDPEKKIPSTAAKAISLS 77
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: RIR2_TREPA (Ribonucleoside-diphosphate reductase subunit beta OS=Treponema pallidum GN=nrdB PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.814e-13 Identity = 61/258 (23.64%), Postives = 117/258 (45.35%), Query Frame = 3 Query: 138 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL--AGRFMTEVQVAEARAFYGFQTAIENIHSEMYSLLLETYIKDSNEKNRLFHAIETVPCVAKK---ATWALNWIDGSETFAERLIAFA--CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC-DFACLLYSLLR------TKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVAD 869 ++YP + + Y++A +FW EE+++S D++ + L+A EK +L+F D I NL G+++T ++ FQ E +HS+ YS +L+T + L+ + +A+ + D A +A A +EGI+F F + L + MPG I+RDE H F ++ L + T + + +++E E E ++ + + G+N +++ YI ++ + Sbjct: 41 MKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYRNLSAIEKTAYDKILSFLIFLDSIQTANLPNIGQYITANEINLCLTIQAFQ---EAVHSQSYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQKEEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGN 295
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: RIR2_BACHD (Ribonucleoside-diphosphate reductase subunit beta OS=Bacillus halodurans GN=nrdB PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.472e-12 Identity = 57/260 (21.92%), Postives = 122/260 (46.92%), Query Frame = 3 Query: 138 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLE--NLAGRFMTEVQVAEARAFYGFQTAIENIHSEMYSLLLETYIKDSNEKNRLFHAIETVPCVAKKATWALN----WIDG--SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT---KLSEERVKALVK----EAVEIEREFVCDALPCALVGMNGELMSQYIEFVADR 872 +++ + +YK A+FWT E+++S D + + LT E+ ++ A D + + A ++T+ +A + FQ E +H++ YS +L + + + + + +F + + ++ + ++ ++D +TF E ++ +EG+ F F + L + M + I+RDE LH ++ L +L+ E K VK +A ++E+++ + + G+N E M YI F+A++ Sbjct: 35 VRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQ---EVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANK 290 The following BLAST results are available for this feature:
BLAST of CK933465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933465 ID=CK933465; Name=CK933465; organism=Citrus sinensis; type=EST; length=941bpback to top |