CK933465

Overview
NameCK933465
Unique NameCK933465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: RIR2_HELPY (Ribonucleoside-diphosphate reductase subunit beta OS=Helicobacter pylori GN=nrdB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 75/304 (24.67%), Postives = 123/304 (40.46%), Query Frame = 3
Query:   81 SIPEEPLLAPNP-DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQTAIENIHSEMYSLLLETYIKDSNE-----------KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWME 935
            S+ E  +   NP   F +  I+Y     ++K   A+ W AEEV ++ D R +  L+A+EK      LA     D +   NL       +   E       Q   E +HS  Y++++E+   ++ E           K++  +  +    +AK  T         E   + L A   +EGI+F   F   + L + G M G       I RDE  H      + + LR + ++         V  + K+AVEIE  +        ++G+   L+ QYI+F+AD             V +P  W+E
Sbjct:   16 SVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKRDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPT--------EENILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYGVQHPIKWVE 311          
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: YVFB_VACCC (Uncharacterized 8.3 kDa protein OS=Vaccinia virus (strain Copenhagen) GN=F ORF B PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.685e-14
Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = -2
Query:  548 ISTASFTNAFTLSSLSFVLNKLYNRHAKSQWRPSSREINSFENVNPGINPRFLSQNIAQKLPEKKIPSTQANAINLS 778
            + TAS     T+SSL      L  +HAKSQ RPSS  I+S ENV+PGI PRFLSQN+    PEKKIPST A AI+LS
Sbjct:    1 MDTASVIIDLTVSSLGGYNKCLNIKHAKSQCRPSSLLISSLENVSPGIRPRFLSQNMEANDPEKKIPSTAAKAISLS 77          
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: RIR2_TREPA (Ribonucleoside-diphosphate reductase subunit beta OS=Treponema pallidum GN=nrdB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.814e-13
Identity = 61/258 (23.64%), Postives = 117/258 (45.35%), Query Frame = 3
Query:  138 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL--AGRFMTEVQVAEARAFYGFQTAIENIHSEMYSLLLETYIKDSNEKNRLFHAIETVPCVAKK---ATWALNWIDGSETFAERLIAFA--CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC-DFACLLYSLLR------TKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVAD 869
            ++YP + + Y++A  +FW  EE+++S D++ +  L+A EK     +L+F    D I   NL   G+++T  ++        FQ   E +HS+ YS +L+T        + L+   +    +A+          + D     A   +A A   +EGI+F   F   + L +   MPG       I+RDE  H   F  ++  L +      T  +    + +++E  E E ++    +   + G+N  +++ YI ++ +
Sbjct:   41 MKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYRNLSAIEKTAYDKILSFLIFLDSIQTANLPNIGQYITANEINLCLTIQAFQ---EAVHSQSYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQKEEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGN 295          
BLAST of CK933465 vs. ExPASy Swiss-Prot
Match: RIR2_BACHD (Ribonucleoside-diphosphate reductase subunit beta OS=Bacillus halodurans GN=nrdB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.472e-12
Identity = 57/260 (21.92%), Postives = 122/260 (46.92%), Query Frame = 3
Query:  138 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLE--NLAGRFMTEVQVAEARAFYGFQTAIENIHSEMYSLLLETYIKDSNEKNRLFHAIETVPCVAKKATWALN----WIDG--SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT---KLSEERVKALVK----EAVEIEREFVCDALPCALVGMNGELMSQYIEFVADR 872
            +++   + +YK   A+FWT  E+++S D + +  LT  E+     ++   A  D +  +    A  ++T+  +A   +   FQ   E +H++ YS +L + +  + + + +F   +    + ++  + ++    ++D    +TF E ++    +EG+ F   F   + L +   M   +     I+RDE LH      ++  L     +L+ E  K  VK    +A ++E+++    +   + G+N E M  YI F+A++
Sbjct:   35 VRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQ---EVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANK 290          
The following BLAST results are available for this feature:
BLAST of CK933465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RIR2_HELPY5.322e-1524.67Ribonucleoside-diphosphate reductase subunit beta ... [more]
YVFB_VACCC7.685e-1458.44Uncharacterized 8.3 kDa protein OS=Vaccinia virus ... [more]
RIR2_TREPA3.814e-1323.64Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_BACHD2.472e-1221.92Ribonucleoside-diphosphate reductase subunit beta ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004285_D01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933465 ID=CK933465; Name=CK933465; organism=Citrus sinensis; type=EST; length=941bp
GCGGGGGTCCTCATCAAACCAAAGAAATAGANNNAAATATCTCTCTATTC
TCCCGAATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCT
TCTAGCCCCAAATCCCGATCGATTTTGCATGTTCCCGATTCAGTACCCAC
AAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAG
GAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGA
CGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACG
GCATCGTCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTC
GCCGAGGCGCGTGCCTTCTACGGCTTCCAAACCGCCATCGAGAACATCCA
CTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCAACG
AAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAG
AAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGA
GAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTT
TTTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGATTAACA
TTCTCAAACGAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGC
GTGCCTGTTGTACAGTTTATTGAGGACGAAGCTAAGCGAGGAGAGAGTGA
AGGCGTTAGTGAAGGAGGCGGTGGAGATAGAGAGAGAGTTTGTGTGCGAT
GCGCTGCCGTGCGCGTTGGTGGGGATGAATGGAGAATTGATGAGTCAGTA
CATAGAGTTTGTCGCGGATAGATTGTTGGGTGCGCTTGGGTACGGGAAGC
TGTACGGTGTGGCGAATCCTTTTGATTGGATGGAGCTGATC
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