CK933895

Overview
NameCK933895
Unique NameCK933895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5456 contig Csv1_Contig5456:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.460e-54
Identity = 108/190 (56.84%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I   HF K WQ  V TWFNQPARK RR+ ARQ KA +I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 7.708e-54
Identity = 107/190 (56.32%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I   HF K WQ  V TWFNQPARK RR+ ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.315e-53
Identity = 107/190 (56.32%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I   HF K WQ  V TWFNQPARK RR+ ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 209.149 bits (531), Expect = 2.243e-53
Identity = 105/190 (55.26%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N ++   HF K WQ  V TWFNQPARK RR+ ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.243e-53
Identity = 108/190 (56.84%), Postives = 135/190 (71.05%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I   HF K WQ  V TWFNQPARK RR+ ARQ KA +I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.454e-52
Identity = 106/190 (55.79%), Postives = 135/190 (71.05%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I   HF K WQ  V TWFNQPARK RR+ ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.607e-51
Identity = 102/192 (53.12%), Postives = 135/192 (70.31%), Query Frame = 2
Query:   83 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            K NN+IPNGHF K WQ +VKTWFNQPAR++RR+  R KKA  + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R+  +  G R
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.751e-49
Identity = 102/187 (54.55%), Postives = 129/187 (68.98%), Query Frame = 2
Query:   98 IPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            +PN HF K WQ YVKTWFNQP RK RR+ ARQ KA KI PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIGI VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PIT ++   +   +T++ K+F A+  L  ERA  R+ GAR
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPIT-QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.078e-47
Identity = 93/178 (52.25%), Postives = 127/178 (71.35%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 622
            N+V+ + HF+K WQ  VKTWFNQPARK RR+ AR+ KA +I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIGI+VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PIT     +   K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.721e-45
Identity = 97/193 (50.26%), Postives = 127/193 (65.80%), Query Frame = 2
Query:   86 HNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGAR 658
            HN V+ N HF+KHWQ  V+TWFNQPARK RR+  R +KA K+FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIGI+VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+   +  +  G R
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
The following BLAST results are available for this feature:
BLAST of CK933895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK3.460e-5456.8460S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT7.708e-5456.3260S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE1.315e-5356.3260S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN2.243e-5355.2660S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN2.243e-5356.8460S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR1.454e-5255.7960S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SPOFR1.607e-5153.1360S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_SCHPO9.751e-4954.5560S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_SCHMA1.078e-4752.2560S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_DICDI1.721e-4550.2660S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933895 ID=CK933895; Name=CK933895; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTTCGTTTCGGCTTTGCTGCCGTCGAGACTGAGAGAAACGGAGATA
GTCTTCTGCATTTCGCTCTGTAAACAAAAATGAAGCACAACAATGTAATT
CCAAATGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTT
TAACCAACCGGCTCGCAAAAATCGACGACAAGTTGCTCGTCAAAAGAAGG
CAATTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCCCCGTCGTT
CATGGCCAGACTTTGAAATATAACATGAAATTAAGGGCTGGCAGAGGCTT
TACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAA
CAATTGGCATTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGT
CTTCAATCTAATGTTCAGAGGCTGAAGACTTACAAGGCCAAGTTGGTTGT
TTTCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCTGCTCCTGAGG
AATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTACTCTT
GAGAAGCCTACTGTCGACCTTGTTAAGGTTACTCAAGATATGAAGTCCTT
CAAGGCTTATGACAAGCTCCGGATTGAGCGTGCGAACGAGCGCCATTTTG
GTGCCAGGTTGAAGAAGGCTGCAGAGGCTGAAAAGGAAGAGAAGAAGTAA
ACAAACTTGTTTAAGCAGCACATTGAGTGTGGCACTACATTTTACATTTC
AATTTNNNATCTTTTTGTTATAGTGATTTTCATCTCTTNGCTTTAGGTTT
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