CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_SCYCA (NADH-ubiquinone oxidoreductase chain 4 OS=Scyliorhinus canicula GN=MTND4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.386e-24
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG +   I   T     GA+  +I+HGL+S+ALF LA T+Y+RI    L    G+ + +P + T + + ++A+LALP     V EL++   +     + ++       +  IG+++T  YS
Sbjct:  284 KSMIAYSSVSHMGLVAGAILIQTPWSFAGAITLMIAHGLVSSALFCLANTNYERIHSRTLLLARGVQVILPLMATWWLLANLANLALPPSPNLVGELLIISSLFNWSNWTIL-------LTGIGVLITASYS 408          

HSP 2 Score: 55.4546 bits (132), Expect = 1.386e-24
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI + L P    +  P F+I+    I+  +S    Q +LK
Sbjct:  206 VKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRIIIMLNPITKEMAYP-FIILAIWGIVMTSSICLRQTDLK 284          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_RAT (NADH-ubiquinone oxidoreductase chain 4 OS=Rattus norvegicus GN=Mtnd4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.348e-24
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I  I   T     GA + +I+HGL S+ LF LA T+Y+RI    +    GL +  P + T + + S+A+LALP +   + EL +     +    +  P I++   MA  +++T +YS
Sbjct:  283 KSLIAYSSVSHMALVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMATWWLLASLANLALPPLINLMGELFIVMATFS----WSNPSIIL---MATNIVITGMYS 407          

HSP 2 Score: 56.9954 bits (136), Expect = 2.348e-24
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +K+P+   H WLP  H EA  +  M+LA ILLK+G YG++R+++ L P   S+  P F+I+    +I  +S    Q +LK
Sbjct:  205 IKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRVSIILDPLTKSLAYP-FIILSLWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ZAGBR (NADH-ubiquinone oxidoreductase chain 4 OS=Zaglossus bruijni GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.055e-24
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++      T  G  GA   +I+HGL S+ LF LA T+Y+R     +  + GL + +P + + + + S+ +L LP     ++EL++     +   F L+       ++ +  ++T IYS
Sbjct:  283 KSLIAYSSISHMGLVVAASLIQTPWGFMGATAMMIAHGLTSSMLFCLANTNYERAHSRTMVLIRGLQMVLPLMSSWWLLASLTNLGLPPTINLISELMIIVSTFSWSNFTLI-------LLGLNTVITAIYS 407          

HSP 2 Score: 59.3066 bits (142), Expect = 3.055e-24
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+  FH WLP  H EA  +  M+LA ILLK+G YG++RI + L P +  +  P F+I+ T  +I  +S    Q +LK
Sbjct:  205 VKMPLYGFHLWLPKAHVEAPIAGSMVLAAILLKLGGYGILRIIIILEPISKFMAYP-FIILATWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CARAU (NADH-ubiquinone oxidoreductase chain 4 OS=Carassius auratus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.976e-24
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG +  GI   T  G +GA++ +I+HGL+S+ALF LA T+Y+R     +    GL I  P     + I ++A+LALP +   + EL++   +     + ++       +  +G ++T  YS
Sbjct:  284 KSLIAYSSVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQIIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIL-------LTGLGTLITAGYS 408          

HSP 2 Score: 54.6842 bits (130), Expect = 3.976e-24
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P +  +  P F+I+    II   S    Q +LK
Sbjct:  206 VKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVMLDPLSKELAYP-FIILALWGIIMTGSICLRQTDLK 284          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CANAL (NADH-ubiquinone oxidoreductase chain 4 OS=Candida albicans GN=NAD4 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 5.173e-24
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK P++P HTWLP  H E+  +  MLLAG++LK+  Y +IR+ +  L  A  +++P   ++  + IIY +  +  Q +LK
Sbjct:  188 VKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAVYAIIRLIIPTLSDATVLYTPVVYVICAITIIYTSIITLRQTDLK 267          

HSP 2 Score: 64.6994 bits (156), Expect = 5.173e-24
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = -2
Query:   87 IAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFL-AGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 389
            +AYSS+SHM   ILGI S +  G+NG+++  ++HG +S ALF +  G  YDR     +    GL   +P +     ILS +++  P    F+ EL+   G I
Sbjct:  270 VAYSSISHMAVCILGILSNSLAGINGSLILSLAHGFVSPALFIIVGGILYDRYHHRLIYYYQGLLTYMPILAIYLLILSFSNIGTPLTVNFIGELLSLTGAI 371          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_SQUAC (NADH-ubiquinone oxidoreductase chain 4 OS=Squalus acanthias GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.174e-24
Identity = 44/132 (33.33%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG +   I   T     GA+  +I+HGL+S+ALF LA T+Y+R     L    G+ + +P + T + I ++A+LALP     + EL++   +     + ++       +  +G+++T  YS
Sbjct:  284 KSLIAYSSVSHMGLVAGAIMIQTPWSFAGAITLMIAHGLVSSALFCLANTNYERTHSRTLLLARGIQVMLPLMATWWFIANLANLALPPTPNLMGELLIISSLFNWSSWTIL-------LTGLGVLITASYS 408          

HSP 2 Score: 55.8398 bits (133), Expect = 5.174e-24
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI + L P    +  P F+I+    +I  +S    Q +LK
Sbjct:  206 VKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRIIVMLNPLTKEMAYP-FLILAIWGVIMTSSICLRQTDLK 284          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_MOUSE (NADH-ubiquinone oxidoreductase chain 4 OS=Mus musculus GN=Mtnd4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.733e-24
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I  I   T     GA + +I+HGL S+ LF LA ++Y+RI    +    GL +  P + T + + S+A+LALP     + EL +   + +   F ++       +M I +I+T +YS
Sbjct:  283 KSLIAYSSVSHMALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQMVFPLMATWWLMASLANLALPPSINLMGELFITMSLFSWSNFTII-------LMGINIIITGMYS 407          

HSP 2 Score: 55.4546 bits (132), Expect = 6.733e-24
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +K+P+   H WLP  H EA  +  M+LA ILLK+G+YG+IRI++ L P    +  P F+++    +I  +S    Q +LK
Sbjct:  205 IKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGSYGMIRISIILDPLTKYMAYP-FILLSLWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TACAC (NADH-ubiquinone oxidoreductase chain 4 OS=Tachyglossus aculeatus aculeatus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.733e-24
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG ++      T  G  GA   +I+HGL S  LF LA T+Y+R     +  + GL + +P + + + + S+A+L LP     ++EL++     +     L+       ++ +  ++T IYS
Sbjct:  283 KSLIAYSSVSHMGLVVAASLIQTPWGFMGATAMMIAHGLTSTMLFRLANTNYERAHSRTMVLIRGLQMVLPLMSSWWLLASLANLGLPPTINLISELMIIVSAFSWSNLTLI-------LLGLNTVITAIYS 407          

HSP 2 Score: 59.3066 bits (142), Expect = 6.733e-24
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+  FH WLP  H EA  +  M+LA ILLK+G YG++RI + L P +  +  P F+I+ T  +I  +S    Q +LK
Sbjct:  205 VKMPLYGFHLWLPKAHVEAPIAGSMVLAAILLKLGGYGILRIIIILEPISKLMAYP-FIILATWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AVAUN (NADH-ubiquinone oxidoreductase chain 4 OS=Avahi unicolor GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.762e-24
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T  G  GA   +I+HGL S+ LF LA ++Y+RI    +    GL   +P   T + + S+ +LALP     + EL+V    ITS   F    I +  ++ + M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLTATWWLLASLNNLALPPSINLIGELLV---TITS---FSWSNITV-ILIGLNMLITALYS 407          

HSP 2 Score: 57.7658 bits (138), Expect = 8.762e-24
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI M L P   S+  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILDPTTKSMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CROLA (NADH-ubiquinone oxidoreductase chain 4 OS=Crossostoma lacustre GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.483e-23
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  102 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIV 398
            K  IAYSSVSHMG +  GI   T  G  GA++ +I+HGL+S+ALF LA T+Y+R     +    GL +  P     + I ++A+LALP +   + EL++
Sbjct:  284 KSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMIFPLTAVWWFIANLANLALPPLPNLMGELMI 382          

HSP 2 Score: 54.6842 bits (130), Expect = 1.483e-23
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P +  +  P F+I+    II   S    Q +LK
Sbjct:  206 VKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVVLDPLSKELAYP-FIILALWGIIMTGSICLRQTDLK 284          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_SCYCA1.386e-2434.85NADH-ubiquinone oxidoreductase chain 4 OS=Scyliorh... [more]
NU4M_RAT2.348e-2435.61NADH-ubiquinone oxidoreductase chain 4 OS=Rattus n... [more]
NU4M_ZAGBR3.055e-2431.06NADH-ubiquinone oxidoreductase chain 4 OS=Zaglossu... [more]
NU4M_CARAU3.976e-2434.85NADH-ubiquinone oxidoreductase chain 4 OS=Carassiu... [more]
NU4M_CANAL5.173e-2437.50NADH-ubiquinone oxidoreductase chain 4 OS=Candida ... [more]
NU4M_SQUAC5.174e-2433.33NADH-ubiquinone oxidoreductase chain 4 OS=Squalus ... [more]
NU4M_MOUSE6.733e-2434.85NADH-ubiquinone oxidoreductase chain 4 OS=Mus musc... [more]
NU4M_TACAC6.733e-2431.82NADH-ubiquinone oxidoreductase chain 4 OS=Tachyglo... [more]
NU4M_AVAUN8.762e-2437.12NADH-ubiquinone oxidoreductase chain 4 OS=Avahi un... [more]
NU4M_CROLA1.483e-2341.41NADH-ubiquinone oxidoreductase chain 4 OS=Crossost... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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