CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_MACRO (NADH-ubiquinone oxidoreductase chain 4 OS=Macropus robustus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.484e-23
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = -2
Query:   15 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKF---FLMPKIVITFVMAIGMILT 398
            K  IAYSSVSHMG +I+     +     GA   +I+HGL S+ LF LA T+Y+RI    +    GL + +P + T + + S+A+LALP     + EL V     +   F    L    VIT + ++ M++T
Sbjct:  283 KSLIAYSSVSHMGLVIVAALMQSTLSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQLILPLMCTWWLLASLANLALPPTINLLGELAVIISSFSWSHFSIILLGANTVITALYSLHMLIT 413          

HSP 2 Score: 55.8398 bits (133), Expect = 1.484e-23
Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = -1
Query:  397 TLNLETLVNRSYPVALEXXXXXXXXXXXA---VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 723
            TL++ TL+    P+ L                VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI +   P    ++ P F+++    +I  +S    Q +LK
Sbjct:  173 TLHILTLIMNPKPMELSMPNSILWYACTVAFMVKMPMYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRITILTQPITAHVYYP-FIVLSLWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AVACL (NADH-ubiquinone oxidoreductase chain 4 OS=Avahi cleesei GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.484e-23
Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T  G  GA   +I+HGL S+ LF LA ++Y+RI    +    GL   +P + T + + S+ +LALP     + EL+V    ITS   F    I +  ++ + M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLMTTWWLLASLNNLALPPSINLIGELLV---TITS---FSWSNITV-ILIGLNMLITALYS 407          

HSP 2 Score: 56.225 bits (134), Expect = 1.484e-23
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI + L P   S+  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITIILDPTTKSMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_DANRE (NADH-ubiquinone oxidoreductase chain 4 OS=Danio rerio GN=mt-nd4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.930e-23
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSV HMG +  GI   T  G  GA++ +I+HGL S+ALF LA TSY+R     +    GL + +P     + I ++A+LALP +   + EL++   +     F   P  +I  +  +G ++T  YS
Sbjct:  284 KSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQMVLPLATVWWFIANLANLALPPLPNLMGELMIITAL-----FNWSPWTII--ITGMGTLITANYS 408          

HSP 2 Score: 53.1434 bits (126), Expect = 1.930e-23
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P +  +  P F+I+    +I        Q +LK
Sbjct:  206 VKMPLYGMHLWLPKAHVEAPVAGSMILAAVLLKLGGYGMMRMMVMLDPLSKQLAYP-FIILALWGVIMTGLVCLRQTDLK 284          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_DIDMA (NADH-ubiquinone oxidoreductase chain 4 OS=Didelphis marsupialis virginiana GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.511e-23
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+     + T   GA + +++HGL S+ LF LA T+Y+RI    +    GL + +P + T +   S+A+LALP     + EL++     +   F ++       ++ +  ++T +YS
Sbjct:  283 KSLIAYSSVSHMALVIIAALIQSTTSFMGATILMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQLILPLMTTWWLTASLANLALPPTINLLGELMIITASFSWSNFSIL-------LLGLNTVITALYS 407          

HSP 2 Score: 55.8398 bits (133), Expect = 2.511e-23
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +K+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI++   P    +  P F+I+    +I  +S    Q +LK
Sbjct:  205 IKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFTEPMTMHLLYP-FIILSMWGMIMTSSICMRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_MYXGL (NADH-ubiquinone oxidoreductase chain 4 OS=Myxine glutinosa GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.269e-23
Identity = 47/134 (35.07%), Postives = 78/134 (58.21%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDR--IRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG +   I +++  G++GA + +I+HGL S+ALFFLA ++Y++   R   L     + +P+  ++ LF IL+  +LA+P    F++E+ +          FL   +   F +A+ M++T  YS
Sbjct:  283 KALIAYSSVSHMGLMTASIMTLSLWGMSGAFIMMIAHGLSSSALFFLANSNYEKTNTRTIILLRHTQMLLPLTSLWWLFIILT--NLAMPPSINFISEITIM------SSLFLWSPLTFPF-LALTMVITTTYS 407          

HSP 2 Score: 53.1434 bits (126), Expect = 3.269e-23
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = -1
Query:  481 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHS 636
            +K P+  FH WLP  H EA  +  M LA ++LK+G YG+IR++  L+P  HS
Sbjct:  205 IKTPLYGFHLWLPKAHVEATIAGSMTLAALMLKLGGYGMIRLS--LMPFLHS 254          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_STRPU (NADH-ubiquinone oxidoreductase chain 4 OS=Strongylocentrotus purpuratus GN=ND4 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.252e-23
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = -2
Query:   21 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMI 398
            K  IAYSSV HM  +   I S T  G+NGA++ +++HGL+S+ALF LA T Y+R     L    GL + +P     + ++  A+L LP     + E+++   +I S   +L P  ++ F    G I
Sbjct:  286 KALIAYSSVGHMSIVAAAIFSETSWGMNGALMLMVAHGLVSSALFSLANTVYERSGTRTLAITRGLKLLLPLSTLWWLLMCAANLGLPPSPNLIGEILILSSLI-SWSVWLFP--IVGFAQVFGAI 408          

HSP 2 Score: 53.9138 bits (128), Expect = 4.252e-23
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = -1
Query:  445 LPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIR-------INMGLLPHAHSIFSPWFMIVGTV 630
            LP+  FH WLP  H EA  +  M+LA ILLK+G YGL+R       I+M  L  A  +F  W  ++ +V
Sbjct:  209 LPVYGFHLWLPKAHVEAPVAGSMILAAILLKIGGYGLMRLIALFSTISMNALSLALIVFCTWGALITSV 277          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ASTPE (NADH-ubiquinone oxidoreductase chain 4 OS=Asterina pectinifera GN=ND4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.252e-23
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = -2
Query:   87 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 398
            K  IAYSSV HM  +  GI S++  G+NGA+  +I+HGLIS+ALF LA   Y+R     L    G  +  P +   ++I  +A+L LP     + EL++   II
Sbjct:  286 KALIAYSSVGHMSIVASGIFSLSLWGINGALTLMIAHGLISSALFCLANLLYERNGTRTLSITRGFKMVTPLLTLWWTITCVANLGLPPTPNLIGELLILVAII 389          

HSP 2 Score: 55.8398 bits (133), Expect = 4.252e-23
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = -1
Query:  514 PTLNLETLVNRSYPVALEXXXXXXXXXXXAVKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIR 726
            P+++L   +  S P+ L             +K+PI  FH WLP  H EA  +  M+LA ILLK+G YGL+R
Sbjct:  178 PSIHLTNYIT-SLPITLTSIWWIFCFIAFIIKMPIYGFHLWLPKAHVEAPIAGSMILAAILLKLGGYGLLR 247          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CAPMR (NADH-ubiquinone oxidoreductase chain 4 OS=Caperea marginata GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.253e-23
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = -2
Query:   18 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII--TSQKFFLM-PKIVITFVMAIGMIL 398
            K  IAYSSVSHM  +I  I   T     GA   +I+HGL S+ LF LA ++Y+RI    +    GL I +P + T + + S+ +LALP     + EL+    I   ++   FLM   IVIT + ++ M++
Sbjct:  283 KSLIAYSSVSHMALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRIMILARGLQISLPLMATWWLLASLTNLALPPTINLIGELLTVMSIFSWSNPTIFLMGTNIVITALYSLYMLI 412          

HSP 2 Score: 54.299 bits (129), Expect = 4.253e-23
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI   L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITFMLDPLTEFMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_LEMCA (NADH-ubiquinone oxidoreductase chain 4 OS=Lemur catta GN=MT-ND4 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.200e-23
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA + +I+HGL S+ LF LA ++Y+RI    +    G+   +P + T + + S+ +LALP     + EL V      +   F    I I  +M + M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTILPLMATWWLLASLTNLALPPSINLIGELFV------TMASFSWSNITI-ILMGLNMLITALYS 407          

HSP 2 Score: 55.8398 bits (133), Expect = 7.200e-23
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI M L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMILNPMTKYMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_BOVIN (NADH-ubiquinone oxidoreductase chain 4 OS=Bos taurus GN=MT-ND4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.368e-23
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA   +I+HGL S+ LF LA ++Y+RI    +    GL   +P + T + + S+ +LALP     + EL V     +          +   +M + M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSN-------ITIILMGVNMVITALYS 407          

HSP 2 Score: 55.0694 bits (131), Expect = 9.368e-23
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI + L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITLILNPMTDFMAYPFIML 264          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_MACRO1.484e-2335.88NADH-ubiquinone oxidoreductase chain 4 OS=Macropus... [more]
NU4M_AVACL1.484e-2337.12NADH-ubiquinone oxidoreductase chain 4 OS=Avahi cl... [more]
NU4M_DANRE1.930e-2336.36NADH-ubiquinone oxidoreductase chain 4 OS=Danio re... [more]
NU4M_DIDMA2.511e-2331.82NADH-ubiquinone oxidoreductase chain 4 OS=Didelphi... [more]
NU4M_MYXGL3.269e-2335.07NADH-ubiquinone oxidoreductase chain 4 OS=Myxine g... [more]
NU4M_STRPU4.252e-2334.92NADH-ubiquinone oxidoreductase chain 4 OS=Strongyl... [more]
NU4M_ASTPE4.252e-2339.42NADH-ubiquinone oxidoreductase chain 4 OS=Asterina... [more]
NU4M_CAPMR4.253e-2336.92NADH-ubiquinone oxidoreductase chain 4 OS=Caperea ... [more]
NU4M_LEMCA7.200e-2334.85NADH-ubiquinone oxidoreductase chain 4 OS=Lemur ca... [more]
NU4M_BOVIN9.368e-2333.33NADH-ubiquinone oxidoreductase chain 4 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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