CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_RHIUN (NADH-ubiquinone oxidoreductase chain 4 OS=Rhinoceros unicornis GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.203e-21
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+ +LALP     V EL V   +++S   F    + I  +M   +I+T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLLPLMAMWWLLASLTNLALPPTINLVGELFV---VVSS---FSWSNLTI-ILMGTNIIITALYS 407          

HSP 2 Score: 56.6102 bits (135), Expect = 2.203e-21
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI M L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITMILNPLTSHMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CANLU (NADH-ubiquinone oxidoreductase chain 4 OS=Canis lupus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.866e-21
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ +   T     GA   +I+HGL S+ LF LA ++Y+RI    +    GL   +P +   + + S+ +LALP     + EL V   +++S   F    I I  +M I + +T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFV---VMSS---FSWSNITI-ILMGINITITALYS 407          

HSP 2 Score: 55.0694 bits (131), Expect = 2.866e-21
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI   L P  + +  P FM++    +I  +S    Q +LK
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTLLNPLTNFMAYP-FMMLSLWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ELEMA (NADH-ubiquinone oxidoreductase chain 4 OS=Elephas maximus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.866e-21
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA+  +I+HGL S+ LF LA ++Y+RI    +    GL   +P +   + + S+ ++A P     + EL++   I TS   F    + I F M + +++T +Y+
Sbjct:  283 KSLIAYSSVSHMALVIIAIMLQTPWSFMGALTLMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAAWWLLASLINMAPPPTINLIGELLI---ITTS---FSWSNLTI-FPMGLNVLITTMYT 407          

HSP 2 Score: 56.225 bits (134), Expect = 2.866e-21
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI + L P    ++ P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITILLDPLTMHMYYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CERSI (NADH-ubiquinone oxidoreductase chain 4 OS=Ceratotherium simum GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.866e-21
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = -2
Query:   15 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLM---PKIVITFVMAIGMILT 398
            K  IAYSSVSHM  +I+ +   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+ +LALP     V EL V     +     ++     I+IT + ++ M++T
Sbjct:  283 KSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLLPLMAMWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGTNIIITALYSLYMLIT 413          

HSP 2 Score: 56.225 bits (134), Expect = 2.866e-21
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI M L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITMILNPLTSYMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CHICK (NADH-ubiquinone oxidoreductase chain 4 OS=Gallus gallus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-21
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = -2
Query:   45 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVIT 398
            K  IAYSSVSHMG +I      T    +GA++ +ISHGL S+ LF LA T+Y+R     L    GL   +P +   + + ++ ++ALP  +  +AEL +   +      +  P I++T
Sbjct:  283 KSLIAYSSVSHMGLVIAASMIQTQWSFSGAMILMISHGLTSSLLFCLANTNYERTHSRILILTRGLQPLLPLMSVWWLLANLTNMALPPTTNLMAELTIMVALFN----WSSPTIILT 396          

HSP 2 Score: 52.373 bits (124), Expect = 3.728e-21
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK P+   H WLP  H EA  +  MLLA +LLK+G YG++R+ + + P ++ +  P+  +
Sbjct:  205 VKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRVTLLMEPVSNFLHYPFLTL 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_HUMAN (NADH-ubiquinone oxidoreductase chain 4 OS=Homo sapiens GN=MT-ND4 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.728e-21
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHM  ++  I   T     GAV+ +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+A+LALP     + EL V     +     L+       +  + M++T +YS
Sbjct:  283 KSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNITLL-------LTGLNMLVTALYS 407          

HSP 2 Score: 54.6842 bits (130), Expect = 3.728e-21
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P    +  P F+++    +I  +S    Q +LK
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYP-FLVLSLWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_HALGR (NADH-ubiquinone oxidoreductase chain 4 OS=Halichoerus grypus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.849e-21
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = -2
Query:   15 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLM---PKIVITFVMAIGMILT 398
            K  IAYSSVSHM  +I+ I   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL + +P +   + + S+ +LALP     + EL V     +     ++     I+IT + ++ M++T
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYMLIT 413          

HSP 2 Score: 53.5286 bits (127), Expect = 4.849e-21
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++RI   L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITALLSPLTSFMAYPFMML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_RABIT (NADH-ubiquinone oxidoreductase chain 4 OS=Oryctolagus cuniculus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.849e-21
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA   +I+HGL S+ LF LA ++Y+RI    +    GL   +P +   + + S+ +LALP     + EL++     +     ++       +M   +++T +YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERIHSRTMLLARGLQTILPLMAAWWLVASLTNLALPPTINLLGELLIIMASFSWSNLTII-------LMGTNVLITALYS 407          

HSP 2 Score: 54.6842 bits (130), Expect = 4.849e-21
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI + L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITILLSPITDYMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_DUGDU (NADH-ubiquinone oxidoreductase chain 4 OS=Dugong dugon GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.849e-21
Identity = 40/132 (30.30%), Postives = 64/132 (48.48%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA   +I+HGL S+ LF LA ++Y+R+    +    GL   +P +   + +  + +LALP     + EL +     +   + ++        M   M+LT  Y+
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERVHSRTMILARGLQTLLPLMAAWWLLACLTNLALPPTINLIGELFIILASFSWSNYTIL-------FMGFNMLLTASYT 407          

HSP 2 Score: 56.225 bits (134), Expect = 4.849e-21
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI + L P   S+  P+ M+
Sbjct:  205 VKMPLYGIHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITILLDPLTKSMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PISOC (NADH-ubiquinone oxidoreductase chain 4 OS=Pisaster ochraceus GN=NAD4 PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.307e-21
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = -2
Query:   21 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMI 398
            K  IAYSSV HM  +  GI +++  G+NGA   +I+HGLIS++LF LA   Y+R     L    G  +  P +   + I  + +L LP     + EL++   +I    + +   I+IT     G I
Sbjct:  286 KALIAYSSVGHMSMVAAGIFTLSPWGINGATTLMIAHGLISSSLFCLANILYERNNTRTLAITRGFKLITPLLSLWWIITCVTNLGLPPTPNLIGELLIISSVI---NWNISSFIIITSATVFGAI 408          

HSP 2 Score: 51.9878 bits (123), Expect = 6.307e-21
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = -1
Query:  505 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINM 636
            +K+PI  FH WLP  H EA  +  M+LA ILLK+G YGL R  +
Sbjct:  207 IKMPIYGFHLWLPKAHVEAPIAGSMILAAILLKLGGYGLARTTL 250          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_RHIUN2.203e-2134.85NADH-ubiquinone oxidoreductase chain 4 OS=Rhinocer... [more]
NU4M_CANLU2.866e-2134.85NADH-ubiquinone oxidoreductase chain 4 OS=Canis lu... [more]
NU4M_ELEMA2.866e-2133.33NADH-ubiquinone oxidoreductase chain 4 OS=Elephas ... [more]
NU4M_CERSI2.866e-2132.06NADH-ubiquinone oxidoreductase chain 4 OS=Ceratoth... [more]
NU4M_CHICK3.728e-2134.75NADH-ubiquinone oxidoreductase chain 4 OS=Gallus g... [more]
NU4M_HUMAN3.728e-2131.82NADH-ubiquinone oxidoreductase chain 4 OS=Homo sap... [more]
NU4M_HALGR4.849e-2132.06NADH-ubiquinone oxidoreductase chain 4 OS=Halichoe... [more]
NU4M_RABIT4.849e-2131.06NADH-ubiquinone oxidoreductase chain 4 OS=Oryctola... [more]
NU4M_DUGDU4.849e-2130.30NADH-ubiquinone oxidoreductase chain 4 OS=Dugong d... [more]
NU4M_PISOC6.307e-2133.33NADH-ubiquinone oxidoreductase chain 4 OS=Pisaster... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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