CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PANPA (NADH-ubiquinone oxidoreductase chain 4 OS=Pan paniscus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.307e-21
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  ++  I   T     GAV+ +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+A+LALP     + EL V   ++TS  +     ++  F     M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSV---LVTSFSWSNTTLLLTGF----NMLITALYS 407          

HSP 2 Score: 53.9138 bits (128), Expect = 6.307e-21
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_LEPST (NADH-ubiquinone oxidoreductase chain 4 OS=Lepilemur septentrionalis GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.067e-20
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I+ I   T     GA   +I+HGL S+ LF LA ++Y+RI    +    GL   +P + T + + S+ +LALP     + EL +     +         I++T    + M++T  YS
Sbjct:  283 KSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNM----TIILT---GLNMLITATYS 407          

HSP 2 Score: 53.5286 bits (127), Expect = 1.067e-20
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            +K+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI   L P    +  P+ M+
Sbjct:  205 IKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_HORSE (NADH-ubiquinone oxidoreductase chain 4 OS=Equus caballus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.067e-20
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = -2
Query:   15 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLM---PKIVITFVMAIGMILT 398
            K  IAYSSVSHM  +I+ +   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+ +LALP     + EL V     +     ++     I IT + ++ M++T
Sbjct:  283 KSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITITALYSLYMLIT 413          

HSP 2 Score: 55.8398 bits (133), Expect = 1.067e-20
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG++RI   L P    +  P+ M+
Sbjct:  205 VKMPVYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITTMLNPQTSFMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ARBLI (NADH-ubiquinone oxidoreductase chain 4 OS=Arbacia lixula GN=ND4 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.388e-20
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = -2
Query:  105 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELI 398
            K  IAYSSV HM  +  G+ S T  G+NGA++ +I+HGL+S+ALF LA T Y+R     L    G+ + +P     + I+  A+L  P  S  + E++
Sbjct:  283 KALIAYSSVGHMSIVAAGVFSQTIWGINGALMLMIAHGLVSSALFALANTMYERSGTRTLVITRGMKLILPLSTFWWLIMCAANLGFP-YSNLIGEIL 379          

HSP 2 Score: 53.5286 bits (127), Expect = 1.388e-20
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+PI  FH WLP  H EA  +  M+LA ILLK+G YGL+R+
Sbjct:  204 VKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLMRL 245          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_GORGO (NADH-ubiquinone oxidoreductase chain 4 OS=Gorilla gorilla gorilla GN=MT-ND4 PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.388e-20
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHM  ++  I   T     GAV+ +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+A+LALP     + EL V     +     L+       +    M++T +YS
Sbjct:  283 KSLIAYSSISHMALVVAAILIQTPWSFTGAVVLMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLMALWWLLASLANLALPPTINLLGELSVLVTTFSWSNTTLL-------LTGSNMLITALYS 407          

HSP 2 Score: 54.6842 bits (130), Expect = 1.388e-20
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P    +  P F+ +    +I  +S S  Q +LK
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMMLAAVLLKLGGYGMMRLMLILNPLTKHMAYP-FLALSLWGMIMTSSISLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_EQUAS (NADH-ubiquinone oxidoreductase chain 4 OS=Equus asinus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.388e-20
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = -2
Query:   15 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLM---PKIVITFVMAIGMILT 398
            K  IAYSSVSHM  +I+ +   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+ +LALP     + EL V     +     ++     I IT + ++ M++T
Sbjct:  283 KSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITITALYSLYMLIT 413          

HSP 2 Score: 55.4546 bits (132), Expect = 1.388e-20
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+     WLP  H EA  +  M+LA ILLK+G YG++RI M L P  + +  P+ M+
Sbjct:  205 VKMPLYGLRLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITMMLNPQTNFMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_MYTED (NADH-ubiquinone oxidoreductase chain 4 OS=Mytilus edulis GN=ND4 PE=3 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.390e-20
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +KLP+ PFH WLP  H EA  +  MLLAG++LK+G YGL+R  + +     S+F    + V      YA      Q +LK
Sbjct:  187 IKLPMYPFHLWLPKAHVEAPVAGSMLLAGVVLKLGGYGLLRFMLVMQVSLSSVFFVLLLSVNLAGGFYAGLACVRQVDLK 266          

HSP 2 Score: 56.9954 bits (136), Expect = 1.390e-20
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = -2
Query:   99 IAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSY--DRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVF 389
            +AYSSV+HM  ++LG+ S T  G+ GA++ ++ HGL S+ LF      Y     R   +++ G L  P+  +  +  +LS +++A P       E++VF
Sbjct:  269 VAYSSVAHMSLVLLGVLSNTLLGVMGAIIIMVGHGLCSSGLFSYVNAIYKMSHSRLLVMNKGGXLFCPV--LVLMCFLLSSSNMAAPPSLNLFGEILVF 365          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AEDAE (NADH-ubiquinone oxidoreductase chain 4 OS=Aedes aegypti GN=mt:ND4 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.350e-20
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSV+HMG ++ G+ ++T  GLNG+   +I+HGL S+ LF LA  SY+R+    L    G+   +P +   + +L   ++A P     + E+ +   I++     ++    ++F  A   +    YS
Sbjct:  272 KALIAYSSVAHMGIVLSGLMTMTYWGLNGSYTLMIAHGLCSSGLFCLANISYERMGSRSLLINKGMLNFMPSLSLWWFLLCSGNMAAPPTLNLLGEISLLNSIVSWSWLTMISLAFLSFFSAAYTLYLFAYS 403          

HSP 2 Score: 53.5286 bits (127), Expect = 2.350e-20
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+P+   H WLP  H EA  S  M+LAG+LLK+G YGL+R+
Sbjct:  194 VKMPMFLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRV 235          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_HYLLA (NADH-ubiquinone oxidoreductase chain 4 OS=Hylobates lar GN=MT-ND4 PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 3.973e-20
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  +I  I   T     GA + +I+HGL S+ LF LA ++Y+R     +    GL   +P +   +   S+A+LALP     + EL V          F      IT +  + +++T +YS
Sbjct:  283 KSLIAYSSVSHMALVITAILIQTPWSFTGATVLMIAHGLTSSLLFCLANSNYERTHSRIMILSRGLQALLPLMAFWWLAASLANLALPPTINLLGELFVLMA------SFSWANTTIT-LTGLNVLITALYS 407          

HSP 2 Score: 54.299 bits (129), Expect = 3.973e-20
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPLTKHMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ANOQU (NADH-ubiquinone oxidoreductase chain 4 OS=Anopheles quadrimaculatus GN=ND4 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.170e-20
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = -2
Query:   84 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIIT 398
            K  IAYSSV+HMG ++ G+ ++T  GL G+   +I+HGL S+ LF LA  SY+R+    L    GL   +P +   + +L   ++A P     + E+ +   I++
Sbjct:  272 KALIAYSSVAHMGIVLSGLLTMTYWGLTGSYALMIAHGLCSSGLFCLANISYERMGSRSLLINKGLLNFMPTLSLWWFLLCSGNMAAPPTLNLLGEISLLNSIVS 376          

HSP 2 Score: 55.4546 bits (132), Expect = 5.170e-20
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  S  M+LAGILLK+G YGL+R+   LL  +   ++ W++ V  +  +  +     Q +LK
Sbjct:  194 VKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRM-FSLLQVSGIKYNYWWISVSLIGGVLISLVCLRQTDLK 272          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_PANPA6.307e-2134.09NADH-ubiquinone oxidoreductase chain 4 OS=Pan pani... [more]
NU4M_LEPST1.067e-2033.33NADH-ubiquinone oxidoreductase chain 4 OS=Lepilemu... [more]
NU4M_HORSE1.067e-2031.30NADH-ubiquinone oxidoreductase chain 4 OS=Equus ca... [more]
NU4M_ARBLI1.388e-2038.78NADH-ubiquinone oxidoreductase chain 4 OS=Arbacia ... [more]
NU4M_GORGO1.388e-2031.82NADH-ubiquinone oxidoreductase chain 4 OS=Gorilla ... [more]
NU4M_EQUAS1.388e-2031.30NADH-ubiquinone oxidoreductase chain 4 OS=Equus as... [more]
NU4M_MYTED1.390e-2040.00NADH-ubiquinone oxidoreductase chain 4 OS=Mytilus ... [more]
NU4M_AEDAE2.350e-2030.30NADH-ubiquinone oxidoreductase chain 4 OS=Aedes ae... [more]
NU4M_HYLLA3.973e-2033.33NADH-ubiquinone oxidoreductase chain 4 OS=Hylobate... [more]
NU4M_ANOQU5.170e-2034.29NADH-ubiquinone oxidoreductase chain 4 OS=Anophele... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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