CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_DROYA (NADH-ubiquinone oxidoreductase chain 4 OS=Drosophila yakuba GN=mt:ND4 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.170e-20
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = -2
Query:   84 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIIT 398
            K  IAYSSV+HMG ++ G+ ++T  GL G+   +I+HGL S+ LF LA  SY+R+    +    GL   +P +   + +LS A++A P     + E+ +   I++
Sbjct:  271 KALIAYSSVAHMGIVLAGLLTMTYWGLCGSYTLMIAHGLCSSGLFCLANVSYERLGSRSMLINKGLLNFMPAMTLWWFLLSSANMAAPPTLNLLGEISLLNSIVS 375          

HSP 2 Score: 53.1434 bits (126), Expect = 5.170e-20
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+P+   H WLP  H EA  S  M+LAGI+LK+G YGL+R+
Sbjct:  193 VKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV 234          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ANOGA (NADH-ubiquinone oxidoreductase chain 4 OS=Anopheles gambiae GN=mt:ND4 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.170e-20
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = -2
Query:   84 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIIT 398
            K  IAYSSV+HMG ++ G+ ++T  GL G+   +I+HGL S+ LF LA  SY+R+    L    GL   +P +   + +L   ++A P     + E+ +   I++
Sbjct:  272 KALIAYSSVAHMGIVLSGLLTMTYWGLTGSYALMIAHGLCSSGLFCLANISYERMGSRSLLINKGLLNFMPTLSLWWFLLCSGNMAAPPTLNLLGEISLLNSIVS 376          

HSP 2 Score: 55.4546 bits (132), Expect = 5.170e-20
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  S  M+LAGILLK+G YGL+R+   LL  +   ++ W++ +  V  +  +     Q +LK
Sbjct:  194 VKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRM-FSLLQISGVKYNYWWISISLVGGVLISLVCLRQTDLK 272          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PONPY (NADH-ubiquinone oxidoreductase chain 4 OS=Pongo pygmaeus GN=MT-ND4 PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 6.721e-20
Identity = 40/132 (30.30%), Postives = 65/132 (49.24%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  ++  I   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+ +LALP     + EL V   + +     ++       +  + M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVVAAILIQTPWSFTGATTLMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLMALWWLLASLTNLALPPTINLLGELSVLMAMFSWSNITIL-------LTGLNMLITALYS 407          

HSP 2 Score: 52.373 bits (124), Expect = 6.721e-20
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +K+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P    +  P F+++    +I  +S    Q +LK
Sbjct:  205 MKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTIILDPLTKHMAYP-FLVLSLWGMIMTSSICLRQTDLK 283          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ASPAM (NADH-ubiquinone oxidoreductase chain 4 OS=Aspergillus amstelodami GN=ND4 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.730e-20
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = -2
Query:   90 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLA-GTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGI 398
            K+ IAYSSVSH     +G  S T  G+ G++   ++HG +S+ LF  A G  YDR     +    G+A  +P    LF ILS+ +   P    F+ E +  +G+
Sbjct:  298 KELIAYSSVSHAAVYSIGAFSNTIQGIEGSIALGLAHGFVSSGLFICAGGILYDRSSTRLITYYRGMAQVMPIFSVLFFILSLGNSGTPLTLNFIGEFMSLYGV 401          

HSP 2 Score: 55.4546 bits (132), Expect = 8.730e-20
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = -1
Query:  427 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAA 636
            VK P+   +TWL   H E+  S  ++LAGI+LK+  YG+ R+ + LLP A   ++    ++G + IIYA+
Sbjct:  219 VKTPVSFLNTWLLKAHVESPLSGSIILAGIVLKLSLYGIFRLILPLLPKASLNYTYIIYVIGVITIIYAS 288          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PELSU (NADH-ubiquinone oxidoreductase chain 4 OS=Pelomedusa subrufa GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.137e-19
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +K+P+   H WLP  H EA  +  M+LAG+LLK+G YG+IR+ + L P   S+  P FM +    II        Q +LK
Sbjct:  206 IKMPLYGLHLWLPKAHVEAPIAGSMILAGVLLKLGGYGIIRVTLMLNPLTKSLSYP-FMTLSLWGIIMTGLICLRQTDLK 284          

HSP 2 Score: 56.6102 bits (135), Expect = 1.137e-19
Identity = 39/132 (29.55%), Postives = 65/132 (49.24%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSV  MG +I      T   + GA++ +I+HGL S+ LF LA T+Y+R     L     +   +P +   + + S+ ++ALP     + EL +   +      F    I I  +  +G +++ +YS
Sbjct:  284 KSLIAYSSVGLMGLVISAALLQTPLSITGAIILMIAHGLSSSMLFCLANTNYERTHNRTLLLTHSMQTLLPLMTIWWLLASLMNMALPPTINLMGELTIIASL------FSWANITI-ILTGLGTLISALYS 408          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PONAB (NADH-ubiquinone oxidoreductase chain 4 OS=Pongo abelii GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.479e-19
Identity = 40/132 (30.30%), Postives = 65/132 (49.24%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHM  ++  I   T     GA   +I+HGL S+ LF LA ++Y+R     +    GL   +P +   + + S+ +LALP     + EL V   + +     ++       +  + M++T +YS
Sbjct:  283 KSLIAYSSVSHMALVVAAILIQTPWSFTGATTLMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLMALWWLLASLTNLALPPTINLLGELSVLMAMFSWSNITIL-------LTGLNMLITTLYS 407          

HSP 2 Score: 51.2174 bits (121), Expect = 1.479e-19
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+   L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLIPILNPLTKHMAYPFIML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PANTR (NADH-ubiquinone oxidoreductase chain 4 OS=Pan troglodytes GN=MT-ND4 PE=3 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 2.501e-19
Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAY SVSHM  ++  I   T     GA++ +I+HGL S+ L  LA ++Y+R     +    GL   +P +   + + S+A+LALP     + EL V   ++TS  +     ++  F     M++T +YS
Sbjct:  283 KSLIAYPSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLSCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSV---LVTSFSWSNTTLLLTGF----NMLITALYS 407          

HSP 2 Score: 53.9138 bits (128), Expect = 2.501e-19
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            VK+P+   H WLP  H EA  +  M+LA +LLK+G YG++R+ + L P    +  P+ M+
Sbjct:  205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLML 264          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_LUMTE (NADH-ubiquinone oxidoreductase chain 4 OS=Lumbricus terrestris GN=ND4 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.230e-19
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = -2
Query:   87 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 398
            K  IAYSSV HMG ++ G    ++ G   A+  +I+HGL S+ALF +A  +Y+      L  M GL +  P +   + + + +++A P     ++E+++   I+
Sbjct:  277 KSLIAYSSVGHMGLMVAGALMSSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTRSLFLMKGLLVLAPTLTMWWFLFTASNMAAPPSINLLSEIMLITSIL 380          

HSP 2 Score: 53.9138 bits (128), Expect = 4.230e-19
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = -1
Query:  418 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTS 636
            VKLP+   H WLP  H EA  +  M+LA ILLK+G YG++R    +L   H +      ++ +V ++ A STS
Sbjct:  199 VKLPMFTVHLWLPKAHVEAPIAGSMILAAILLKLGGYGILR----MLSLFHYMAKSTSSLLSSVALVGAVSTS 267          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_DROME (NADH-ubiquinone oxidoreductase chain 4 OS=Drosophila melanogaster GN=mt:ND4 PE=3 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 4.231e-19
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = -2
Query:   84 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIIT 398
            K  IAYSSV+HMG ++ G+ ++T  GL G+   +I+HGL S+ LF LA  SY+R+    +    GL   +P +   + +LS A++A P     + E+ +   I++
Sbjct:  271 KALIAYSSVAHMGIVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLFCLANVSYERLGSRSMLINKGLLNFMPSMTLWWFLLSSANMAAPPTLNLLGEISLLNSIVS 375          

HSP 2 Score: 50.0618 bits (118), Expect = 4.231e-19
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+P+   + WLP  H EA  S  M+LAGI+LK+G YG++R+
Sbjct:  193 VKMPMFLVYLWLPKAHVEAPVSGSMILAGIMLKLGGYGMLRV 234          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PICCA (NADH-ubiquinone oxidoreductase chain 4 OS=Pichia canadensis GN=ND4 PE=3 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 5.487e-19
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK P+ P HTWLP  H E+  S  ++LAGI++K+  Y +IR+ +  L     I++P    +G + I Y    +  Q ++K
Sbjct:  240 VKTPVFPVHTWLPLVHAESPISGSIILAGIIIKLAIYAIIRLILINLSDVIIIYNPLIYTIGILTIFYIGLITLKQIDIK 319          

HSP 2 Score: 55.4546 bits (132), Expect = 5.487e-19
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = -2
Query:   30 IAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFL-AGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILS-MASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAI 389
            IAYSS+ HM   I+ I S    G+ G++L  I+HG  S ALF L  G  YDR     +     LA  +P IF+++ +++ + ++ +P    F+ E +   GI      F +      F+  I
Sbjct:  322 IAYSSIIHMAIAIMSIFSNNILGIEGSLLISIAHGFASPALFLLVGGILYDRYHSRLIYYYQSLATYMP-IFSIYLLIAGLFNMGIPLSLNFIGEFLSLNGIFIYNSLFAILSTFSLFITTI 442          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_DROYA5.170e-2035.24NADH-ubiquinone oxidoreductase chain 4 OS=Drosophi... [more]
NU4M_ANOGA5.170e-2034.29NADH-ubiquinone oxidoreductase chain 4 OS=Anophele... [more]
NU4M_PONPY6.721e-2030.30NADH-ubiquinone oxidoreductase chain 4 OS=Pongo py... [more]
NU4M_ASPAM8.730e-2034.62NADH-ubiquinone oxidoreductase chain 4 OS=Aspergil... [more]
NU4M_PELSU1.137e-1940.00NADH-ubiquinone oxidoreductase chain 4 OS=Pelomedu... [more]
NU4M_PONAB1.479e-1930.30NADH-ubiquinone oxidoreductase chain 4 OS=Pongo ab... [more]
NU4M_PANTR2.501e-1931.82NADH-ubiquinone oxidoreductase chain 4 OS=Pan trog... [more]
NU4M_LUMTE4.230e-1930.77NADH-ubiquinone oxidoreductase chain 4 OS=Lumbricu... [more]
NU4M_DROME4.231e-1935.24NADH-ubiquinone oxidoreductase chain 4 OS=Drosophi... [more]
NU4M_PICCA5.487e-1935.00NADH-ubiquinone oxidoreductase chain 4 OS=Pichia c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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