CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CERCA (NADH-ubiquinone oxidoreductase chain 4 OS=Ceratitis capitata GN=ND4 PE=3 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 5.503e-19
Identity = 39/132 (29.55%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSV+HMG ++ G+ +++  GL+G+   +I HGL S+ LF LA  +Y+R+    L    GL   +P +   + +LS+ ++A P     + E+ +   I++     ++    ++F  A   +    YS
Sbjct:  271 KALIAYSSVAHMGIVLGGLMTLSYWGLSGSYTLMIGHGLCSSGLFCLANITYERLGSRSLLINKGLLNFMPSMTLWWFLLSVCNMAAPPSLNLLGEISLLNSIVSWSWLTMISLSFLSFFSAAYTLYLYAYS 402          

HSP 2 Score: 50.8322 bits (120), Expect = 5.503e-19
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+P+   H WLP  H EA  S  M+LAGI+LK+G YGL+ +
Sbjct:  193 VKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLAV 234          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ALBCO (NADH-ubiquinone oxidoreductase chain 4 OS=Albinaria coerulea GN=ND4 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.505e-19
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = -2
Query:   33 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMA 398
            K  +AYSSV+HM  +  GI  +++     A + +I+HG  S+ALF LA  SY +I+   L  M GL    P +   + + S  ++A P    F+ EL++   +  +    L+   +I F+ A
Sbjct:  265 KALVAYSSVAHMSLVSAGILMMSNWSYTCAKMTMIAHGYTSSALFVLANLSYLKIKSRSLMFMKGLLAIFPAMAFYWFLFSCMNMAAPPTLNFIGELLIIPSMYIASYMLLILMCIIMFISA 386          

HSP 2 Score: 49.6766 bits (117), Expect = 5.505e-19
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = -1
Query:  520 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL 636
            VKLPI   H WLP  H EA     M+LAG+LLK+G YGL
Sbjct:  186 VKLPIYTCHLWLPKAHVEAPLGGSMVLAGVLLKLGGYGL 224          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_LOCMI (NADH-ubiquinone oxidoreductase chain 4 OS=Locusta migratoria GN=ND4 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 9.306e-19
Identity = 36/132 (27.27%), Postives = 67/132 (50.76%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSV+HM  +I G+ ++   G  G++  +I HG+ S+ LF L+   Y+ +    L    G+   +P +   + +LS +++A P     + E  +   II+   + ++  I ++F  A+  +    YS
Sbjct:  271 KSLIAYSSVAHMSLVICGLMTMNWWGCMGSLSLMIGHGISSSGLFCLSNIIYELLGSRSLLINKGMINLMPSMTIWWFLLSSSNMASPPSLNLLGEFSLLNSIISWSSYMILLLIFLSFFSAVYTLYMYSYS 402          

HSP 2 Score: 55.4546 bits (132), Expect = 9.306e-19
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+PI  FH WLP  H EA  S  M+LAGILLK+G YG+ R+
Sbjct:  193 VKMPIFLFHLWLPKAHVEAPISGSMILAGILLKLGGYGIFRM 234          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_XENLA (NADH-ubiquinone oxidoreductase chain 4 OS=Xenopus laevis GN=mt-nd4 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.572e-18
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            VK+P+   H WLP  H EA  +  M+LA ILLK+G YG+IRI++ L P    +  P F+I+    II  +S    Q +LK
Sbjct:  205 VKMPLYGTHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRISITLSPSMKELAYP-FLILSLWGIIMTSSICLRQTDLK 283          

HSP 2 Score: 51.9878 bits (123), Expect = 1.572e-18
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFII-LGIGSITDTGLNGAVLQIISHGLISAALFFLAG-TSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG +I  G        L GA++   S GL  +AL  LA   SY+R     L    GL   +P + T + I ++A++ALP    ++ E+ +   +     +     I++T    +G +LT  YS
Sbjct:  283 KSMIAYSSVSHMGLVISAGNNQTPMKALTGAMILNTSDGLTHSALCCLAKYQSYERTHSRALLLSRGLETILPLMGTWWLISNLANMALPPSPNWMGEITIMTALFNWSSW----TIILT---DLGTLLTASYS 409          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NQO13_THET8 (NADH-quinone oxidoreductase subunit 13 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo13 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.492e-18
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = -2
Query:   93 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFG 398
            K  +AY+ +SHMG   LG+ S T  G  G +  + + G+ +  LF LAG  Y+R     +    GLA   P +  L  IL +A + LPG+SGF  E +   G
Sbjct:  282 KTLLAYAGLSHMGVAALGVFSGTPEGAMGGLYLLAASGVYTGGLFLLAGRLYERTGTLEIGRYRGLAQSAPGLAALALILFLAMVGLPGLSGFPGEFLTLLG 383          

HSP 2 Score: 43.5134 bits (101), Expect = 4.492e-18
Identity = 21/80 (26.25%), Postives = 34/80 (42.50%), Query Frame = -1
Query:  397 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 636
            +K P+ P H WLP  H E H S      G L K+G +   R  + L P   +      + +  +  +Y A  +   ++ K
Sbjct:  203 IKTPLFPLHAWLPPFHQENHPSGLADALGTLYKVGVFAFFRFAIPLAPEGFAQAQGLLLFLAALSALYGAWVAFAAKDFK 282          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_APILI (NADH-ubiquinone oxidoreductase chain 4 OS=Apis mellifera ligustica GN=ND4 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.603e-18
Identity = 37/130 (28.46%), Postives = 67/130 (51.54%), Query Frame = -2
Query:   18 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKF---FLMPKIVITFVMAIGMIL 398
            K  IA SS+ HMG +I+ + +     L G  L +ISHGL S+ LFFL    Y +     +    G+   +P +  L+ +L  +++  P     ++E+++  G+I+  KF    LM   + +F+ +I + +
Sbjct:  277 KSIIAISSIVHMGLMIMSMMTFLKISLIGGYLMMISHGLSSSGLFFLVNVIYSQTNSRLMFINKGMINFMPSMSLLWFMLCSSNMGSPVSLNLISEVMLLIGMISWLKFMMLILMMYCLFSFIYSIYLFM 406          

HSP 2 Score: 49.6766 bits (117), Expect = 7.603e-18
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = -1
Query:  511 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 636
            VK+PI  FH WL   H EA Y   M+LA I+LK+G YG++R+
Sbjct:  199 VKIPIYLFHGWLLKAHVEAPYYGSMILASIMLKLGGYGMLRL 240          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PORHY (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Porthidium hyoprora GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.005e-17
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    GL   +P   T + + ++ ++A+P    F  EL     +ITS  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVATIIIQTPWGLSGALALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNILPMATTWWLLANLMNIAIPPTMNFTGEL-----LITSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 1.005e-17
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+   L      +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRMMQVLPTTKTDMFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PODAN (NADH-ubiquinone oxidoreductase chain 4 OS=Podospora anserina GN=ND4 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.281e-17
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = -2
Query:   93 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLA-GTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFG 398
            K+ IAYSSVSH    ++G+ S    G+ G +L  + HG +S+ LF  A G  YDR     +    G A  +P    LF IL + +   P    FV E +  +G
Sbjct:  330 KELIAYSSVSHAAVYLIGVFSNIIQGIEGGILLGLGHGFVSSGLFICAGGVLYDRSGTRIISYYRGTAQVMPLFSILFFILCLGNCGAPLTLNFVGEFMSLYG 432          

HSP 2 Score: 49.2914 bits (116), Expect = 1.281e-17
Identity = 24/70 (34.29%), Postives = 40/70 (57.14%), Query Frame = -1
Query:  427 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAA 636
            VK P +  ++WL   H E+     ++LAGI+LK+  YG+ R+ + LLP     ++     +G + IIYA+
Sbjct:  251 VKTPTVFLNSWLLKAHVESPLGGSIVLAGIVLKLSLYGIFRLILPLLPKISLNYTSIIFSIGIITIIYAS 320          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIOK (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus okinavensis GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    GL   +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNILPMATTWWLLTNLMNIATPPTMNFTSEL-----LIMSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 35.039 bits (79), Expect = 1.307e-17
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   + +F P FM++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDLFLP-FMVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIFL (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus flavoviridis GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.700e-17
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLLTNLMNIATPPSLNFTSEL-----LIMSSLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 36.1946 bits (82), Expect = 1.700e-17
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+   L P    +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRMMQVLPPTKTDMFLP-FIVLALWGAILANLTCLQQTDLK 60          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_CERCA5.503e-1929.55NADH-ubiquinone oxidoreductase chain 4 OS=Ceratiti... [more]
NU4M_ALBCO5.505e-1931.15NADH-ubiquinone oxidoreductase chain 4 OS=Albinari... [more]
NU4M_LOCMI9.306e-1927.27NADH-ubiquinone oxidoreductase chain 4 OS=Locusta ... [more]
NU4M_XENLA1.572e-1842.50NADH-ubiquinone oxidoreductase chain 4 OS=Xenopus ... [more]
NQO13_THET84.492e-1836.27NADH-quinone oxidoreductase subunit 13 OS=Thermus ... [more]
NU4M_APILI7.603e-1828.46NADH-ubiquinone oxidoreductase chain 4 OS=Apis mel... [more]
NU4M_PORHY1.005e-1736.36NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_PODAN1.281e-1734.95NADH-ubiquinone oxidoreductase chain 4 OS=Podospor... [more]
NU4M_TRIOK1.307e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_TRIFL1.700e-1734.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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