CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AGKHA (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Agkistrodon halys blomhoffi GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.210e-17
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG ++  I   T  GL GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F +EL     +ITS  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSVSHMGLVVAAIIIQTPWGLAGAMTLMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLTNLMNIAIPPSMNFTSEL-----LITSALFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 2.210e-17
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDMFLPFVVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AGKPI (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Agkistrodon piscivorus piscivorus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.873e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    GL   +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNILPMATTWWLLTNLMNIAIPPTMNFTGEL-----LIMSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 2.873e-17
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDMFLPFIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_BOTER (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Bothrops erythromelas GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.736e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F  EL     +ITS  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVATIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLANLMNIAIPPTMNFTGEL-----LITSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 32.7278 bits (73), Expect = 3.736e-17
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = -1
Query:  457 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 564
            M+LA ILLK+G YG+IR+   L      +F P+ ++
Sbjct:    6 MVLAAILLKLGGYGIIRMMQALPTTKTDMFLPFIVL 41          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AZEFE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Azemiops feae GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.736e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    GL   +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAITIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRVLILTRGLHNILPMATTWWLLTNLMNIATPPTLNFTSEL-----LIMSSLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 32.7278 bits (73), Expect = 3.736e-17
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = -1
Query:  457 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 564
            M+LA ILLK+G YG+IRI   L      +F P+  +
Sbjct:    6 MVLAAILLKLGGYGIIRIMQTLPTTKTDLFIPFITL 41          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_SISMI (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Sistrurus miliarius GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.736e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    GL   +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNMMPMATTWWLMANLMNIAIPPSMNFTGEL-----LILSTLFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 3.736e-17
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M + P   + +F P F+++     I A  T   Q +LK
Sbjct:    6 MILAAILLKLGGYGIIRL-MQIFPTTKTDVFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AGKCO (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Agkistrodon contortrix contortrix GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.736e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    GL   +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNILPMATTWWLLTNLMNIAVPPTMNFTGEL-----LIMSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 3.736e-17
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDMFLPFVVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CAURH (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Causus rhombeatus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.857e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T   L+GA+  +I+HG  S+ALF LA TSY+R     L    G    +P   T + + ++ ++A P M  F +E      +I S  F   P  +I  ++++ +++T IYS
Sbjct:   60 KSLIAYSSISHMGLVVAAISIQTQWSLSGAMALMIAHGFTSSALFCLANTSYERTHTRILILTRGFHNILPMTTTWWLLSNLMNIATPPMMNFTSEF-----LILSSLFNWCPTTII--LLSLSILITSIYS 184          

HSP 2 Score: 31.9574 bits (71), Expect = 4.857e-17
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IRI   L      +F P F+ +     + A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGMIRIIQILPSSKTDMFIP-FITLSLWGAVLANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_GLOIT (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Gloydius intermedius GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.857e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSVSHMGLVVAAIMIQTPWGLSGAMTLMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLTNLMNIAIPPTMNFTSEL-----LIMSALFSWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 32.3426 bits (72), Expect = 4.857e-17
Identity = 21/56 (37.50%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M ++P   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQIMPTTKTDMFLPFIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CROAD (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Crotalus adamanteus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.857e-17
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLVTNLMNIAIPPSMNFTGEL-----LIMSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.4982 bits (75), Expect = 4.857e-17
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   + +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDLFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_RHISA (NADH-ubiquinone oxidoreductase chain 4 OS=Rhipicephalus sanguineus GN=ND4 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 6.207e-17
Identity = 34/122 (27.87%), Postives = 60/122 (49.18%), Query Frame = -2
Query:   33 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMA 398
            K  IAYSSVSHMG  + G  +       G ++ +I HGL S+ LF L    Y+R+    +  + G+ I  P +   + + S+ +++ P       EL +  G++       +P +++ F+ A
Sbjct:  260 KSLIAYSSVSHMGITLAGCVTFQLHTSFGMLMMMIGHGLCSSGLFCLKNMIYERLHTRSIMMIKGM-INFPNLSMWWFLFSIINMSAPMTMNLFGELFLGLGLMKYSLLLSLPVMMMIFLSA 380          

HSP 2 Score: 51.6026 bits (122), Expect = 6.207e-17
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = -1
Query:  514 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIR 636
            VK+P+  FH WLP  H EA  +  M+LAG+LLK+G YGL R
Sbjct:  182 VKIPMFLFHLWLPKAHVEAPRAGSMILAGVLLKLGFYGLYR 222          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_AGKHA2.210e-1736.36NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_AGKPI2.873e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_BOTER3.736e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_AZEFE3.736e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_SISMI3.736e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_AGKCO3.736e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_CAURH4.857e-1734.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_GLOIT4.857e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_CROAD4.857e-1734.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_RHISA6.207e-1727.87NADH-ubiquinone oxidoreductase chain 4 OS=Rhipicep... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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