CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_BOTBI (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Bothriopsis bilineata GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.314e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F  EL     +I+S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVATIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLANLMNIAIPPTMNFTGEL-----LISSSLFNWCPTTII--LLGLSMLITACYS 184          

HSP 2 Score: 32.7278 bits (73), Expect = 6.314e-17
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+   L      +F P F+++     + A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRMMQVLPTTKTDMFLP-FIVLALWGAVLANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AGKAC (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Agkistrodon acutus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.314e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T +  +++ ++A+P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLFVNLMNIAIPPTMNFTSEL-----LIMSTLFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 6.314e-17
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPATKTDMFLPFIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIWA (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus wagleri GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.314e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + ++++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSVSHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRVLILTRGFHNILPMATTWWLLINLMNIATPPTINFTSEL-----LIISALFNWCPTTMI--MLGLSMLITASYS 184          

HSP 2 Score: 33.8834 bits (76), Expect = 6.314e-17
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   + +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDVFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PORNA (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Porthidium nasuta GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.314e-17
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIMIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTSTWWLLANLMNMATPPTLNFTSEL-----LIMSTLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 34.2686 bits (77), Expect = 6.314e-17
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   + +F P F+I+     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPMTKTDVFLP-FIILALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CROLE (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Crotalus lepidus GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.067e-16
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA  +Y+R     L    GL   +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANMTYERTHTRILILTRGLHNTLPMATTWWLMTNLMNIAIPPSMNFTGEL-----LIMSSLFNWCPTTII--ILGLSMLITASYS 184          

HSP 2 Score: 31.9574 bits (71), Expect = 1.067e-16
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M + P   + +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQIFPTTKTDLFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIST (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus stejnegeri GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.067e-16
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSVSHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLLANLMNIATPPTMNFTSEL-----LIMSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 1.067e-16
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDMFLPFIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRICN (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus cantori GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.067e-16
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLTNLMNIATPPTMNFTSEL-----LIMSTLFNWCPTTII--LLGMSMLITASYS 184          

HSP 2 Score: 33.8834 bits (76), Expect = 1.067e-16
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IRI M ++P   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRI-MQIMPMTKTDMFLPFLVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_BOTAS (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Bothrops asper GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.387e-16
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG +   I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F +EL     +ITS  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVAAAIIIQTPWGLSGAMTLMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLANLMNIAIPPTLNFTSEL-----LITSTLFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 31.5722 bits (70), Expect = 1.387e-16
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = -1
Query:  457 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 564
            M+LA ILLK+G YG+IR+   L      +F P  ++
Sbjct:    6 MVLAAILLKLGGYGIIRMMQALPTTKTDMFLPLIVL 41          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_LACMU (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Lachesis muta muta GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.387e-16
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVATIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLLANLMNIAMPPTLNFTGEL-----LIMSTLFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 33.4982 bits (75), Expect = 1.387e-16
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+   L      +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRMMQTLPTTKTDMFIP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_BOTSC (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Bothriechis schlegelii GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.387e-16
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F  E      +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILIMTRGFHNILPMTTTWWLLANLMNIAIPPSMNFTGEF-----LIMSALFNWAPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.4982 bits (75), Expect = 1.387e-16
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGMIRM-MQILPTTKTDMFMPFIVLALWGAILANLTCLQQTDLK 60          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_BOTBI6.314e-1734.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_AGKAC6.314e-1734.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_TRIWA6.314e-1735.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_PORNA6.314e-1734.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_CROLE1.067e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_TRIST1.067e-1635.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_TRICN1.067e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_BOTAS1.387e-1635.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_LACMU1.387e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_BOTSC1.387e-1634.09NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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