CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CERGO (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Cerrophidion godmani GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.803e-16
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLLANLMNIATPPTLNFTSEL-----LIMSTLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 1.803e-16
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA +LLK+G YG+IR+   L      +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAVLLKLGGYGIIRMMQTLPTTKTDMFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIRU (NADH-ubiquinone oxidoreductase chain 4 OS=Trichophyton rubrum GN=ND4 PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 2.297e-16
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = -2
Query:   90 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFF-LAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGI 398
            K+ IAYSSVSH    +L   S T  G+ GA+   ++HG +S+ LF  + G  YDR     +    G+A  +P    LF  +++ +   P    F+ E +  +GI
Sbjct:  306 KELIAYSSVSHAAVYLLSAFSNTIQGIEGAIALGLAHGFVSSGLFICVGGILYDRSSTRLITYYRGMAQLMPIFCILFLYITLGNCGSPLTLNFIGEFMSLYGI 409          

HSP 2 Score: 47.7506 bits (112), Expect = 2.297e-16
Identity = 24/70 (34.29%), Postives = 40/70 (57.14%), Query Frame = -1
Query:  427 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAA 636
            VK P I  +TWL   H E+  +  ++LAGI+ K+  YG+ R+ + LLP A   ++    ++G + I Y +
Sbjct:  227 VKTPTIFLNTWLLKAHVESPLAGSVILAGIVWKLRWYGIFRLIIPLLPKASMDYTYIVYVIGVITIFYTS 296          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CROVC (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Crotalus viridis concolor GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.344e-16
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A+P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLMTNLMNIAIPPSMNFTGEL-----LIMSALFNWCPATII--MLGLSMLITASYS 184          

HSP 2 Score: 31.9574 bits (71), Expect = 2.344e-16
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M + P   + +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQIFPTTKTDLFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ATRPI (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Atropoides picadoi GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.344e-16
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLTGAMTLMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLLANLMNIATPPTLNFTSEL-----LIMSTLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 2.344e-16
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDMFLPFIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIAB (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus albolabris GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.047e-16
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLTNLMNIATPPTMNFTSEL-----LIMSTLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 31.9574 bits (71), Expect = 3.047e-16
Identity = 21/56 (37.50%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M ++P   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQIMPTTKTDTFLPFLVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: Y051_MYCTU (Uncharacterized protein Rv0083/MT0090 OS=Mycobacterium tuberculosis GN=Rv0083 PE=3 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 3.857e-16
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = -2
Query:   21 KKRIAYSSVSHMGFIILGIGSIT---DTGLNG--------AVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMI 398
            K+ +AYS+  +MG I L +G+ T   DTG  G        A+L +I+H    +  F  AG+         LD +GGLA  +P     F + ++ +  LP  +GFV+E ++   +I +      P + +T  +A+G++
Sbjct:  268 KRLLAYSTTENMGLITLALGAATLFADTGAYGPASIAAAAAMLHMIAHAAFKSLAFMAAGSVLAATGLRDLDLLGGLARRMPATTVFFGVAALGACGLPLGAGFVSEWLLVQSLIHAAPGH-DPIVALTTPLAVGVV 403          

HSP 2 Score: 44.669 bits (104), Expect = 3.857e-16
Identity = 21/80 (26.25%), Postives = 38/80 (47.50%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K  ++P H WLP  H EA      L++  ++ +G YG++R ++ LL      +    + VG    +Y    +    +LK+
Sbjct:  190 KAGLVPLHAWLPRAHPEAPSPVSALMSAAMVNLGIYGIVRFDLQLLGPGPRWWGLALLAVGGTSALYGVLQASVAADLKR 269          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_POROP (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Porthidium ophryomegas GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.961e-16
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSVSHMG +   I   T  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSVSHMGLVAAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTSTWWLLANLMNIATPPSLNFTSEL-----LIMSTLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 3.961e-16
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   +     F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDMFLPFIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_BOTLA (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Bothriechis lateralis GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.961e-16
Identity = 44/132 (33.33%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T  GL+GA+  +++HG  S++LF LA T+Y+R     L    G    +P   T + + ++ ++A P    F  EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMVAHGFTSSSLFCLANTTYERTHTRILILTRGFHNILPMATTWWLLANLLNIATPPSMNFTGEL-----LIMSALFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.4982 bits (75), Expect = 3.961e-16
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+   L      +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRMMQVLPTTKTEMFLP-FLVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ATRNM (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Atropoides nummifer GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.961e-16
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   +  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQSPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLANLMNIATPPTLNFTSEL-----LIMSTLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.4982 bits (75), Expect = 3.961e-16
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+ M +LP   + +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQILPTTKTDLFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CAEEL (NADH-ubiquinone oxidoreductase chain 4 OS=Caenorhabditis elegans GN=nd4 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 6.583e-16
Identity = 35/123 (28.46%), Postives = 65/123 (52.85%), Query Frame = -2
Query:   33 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAE-LIVFFGIITSQKFFLMPKIVITFVMA 398
            K   AYSSV+HM F++L +  IT +    +V+ +++HG  S  +F+L G  Y       +  M         +  LFS++ +++  +P    F++E L++   ++ S+  F+M  I I FV++
Sbjct:  244 KALAAYSSVTHMSFLLLSLVFITMSSKISSVMLMLAHGYTSTLMFYLIGEFYHTSGSRMIYFMSSFFSSSMIMGILFSVVFLSNSGVPPSLSFLSEFLVISNSMLISKSMFVM--IFIYFVVS 364          

HSP 2 Score: 50.447 bits (119), Expect = 6.583e-16
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = -1
Query:  457 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 636
            +K PI   H WLP  H EA  +  MLLAG+LLK+G  G +RI +G L   H+  + W +I
Sbjct:  169 MKFPIYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRI-LGSLSFVHN--NVWILI 225          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_CERGO1.803e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_TRIRU2.297e-1632.69NADH-ubiquinone oxidoreductase chain 4 OS=Trichoph... [more]
NU4M_CROVC2.344e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_ATRPI2.344e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_TRIAB3.047e-1634.85NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
Y051_MYCTU3.857e-1629.20Uncharacterized protein Rv0083/MT0090 OS=Mycobacte... [more]
NU4M_POROP3.961e-1635.61NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_BOTLA3.961e-1633.33NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_ATRNM3.961e-1634.09NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_CAEEL6.583e-1628.46NADH-ubiquinone oxidoreductase chain 4 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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