CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_TRIEL (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Trimeresurus elegans GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.692e-16
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  I   T   L+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAIIIQTPWSLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMTTTWWLLTNLMNIATPPTLNFTSEL-----LIMSSLFNWCPTTII--LLGLSMLITASYS 184          

HSP 2 Score: 33.113 bits (74), Expect = 6.692e-16
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = -1
Query:  397 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLK 564
            M+LA ILLK+G YG+IR+   L      +F P F+++     I A  T   Q +LK
Sbjct:    6 MVLAAILLKLGGYGIIRMMQVLPTTKTDMFLP-FIVLALWGAILANLTCLQQTDLK 60          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ASCSU (NADH-ubiquinone oxidoreductase chain 4 OS=Ascaris suum GN=ND4 PE=3 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 8.556e-16
Identity = 31/113 (27.43%), Postives = 59/113 (52.21%), Query Frame = -2
Query:   72 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSY----DRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKF 398
            K   AYSS++HM F+++ +  I  +G  G V+ +++HG  S  +F+L G  Y     R+ + Y+    G  + +     LF+++ ++++  P    F++E IV    +   KF
Sbjct:  244 KALAAYSSITHMSFVLMALVFIIMSGKTGGVILMLAHGYTSTLMFYLVGEFYHVSGSRMVY-YMSSFFGSGMIMA---LLFAVVFLSNMGTPPSLSFLSEFIVISSSLNMMKF 352          

HSP 2 Score: 49.2914 bits (116), Expect = 8.556e-16
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = -1
Query:  481 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHS 636
            +K P+   H WLP  H EA  +  MLLAG+LLK+G  G +RI +G L   H+
Sbjct:  169 MKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRI-LGCLSFVHN 219          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_ARTSF (NADH-ubiquinone oxidoreductase chain 4 OS=Artemia sanfranciscana GN=ND4 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.114e-15
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = -2
Query:   93 KKRIAYSSVSHMGFIILG-IGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFG 398
            K  IAYSSV+HM F+ILG + S T T ++ ++L ++SHG+ S+ LF+L+   Y RI          +    P +   +  LS  ++ LP    F +E+  F G
Sbjct:  217 KSLIAYSSVAHMSFVILGMLMSCTYTNMS-SILMMVSHGICSSGLFYLSYLFYARIWSRSFLLTRSMISLFPYLCFWWLSLSFLNMGLPPSLNFFSEMYFFIG 318          

HSP 2 Score: 46.9802 bits (110), Expect = 1.114e-15
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = -1
Query:  505 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINM 636
            VKLP+   H WLP  H EA  +  M+LA ILLK+G YGL  + +
Sbjct:  143 VKLPVYFAHIWLPKAHVEAPVTGSMVLAAILLKLGGYGLYLVQV 186          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_HYPHY (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Hypnale hypnale GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.130e-15
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG ++  +   +  GL+GA+  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P    F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVVAAVIIQSPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLTNLMNIATPPTMNFTSEL-----LIVSTLFNWCPTTII--MLGLSMLITTTYS 184          

HSP 2 Score: 31.187 bits (69), Expect = 1.130e-15
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = -1
Query:  457 MLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMI 564
            M+LA ILLK+G YG+IR+   L      +F P+ ++
Sbjct:    6 MVLAAILLKLGGYGIIRMVQILPTTKTDLFIPFIVL 41          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_DESAP (NADH-quinone oxidoreductase subunit N OS=Desulforudis audaxviator (strain MP104C) GN=nuoN PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.438e-15
Identity = 35/130 (26.92%), Postives = 65/130 (50.00%), Query Frame = -2
Query:    6 KRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIY 395
            + +AYSSV+ +G+I+LG+       L GA+L ++SH L+   LFF+AG          + +  G+A  +P     F   +++ + LP   GF ++  +  G + +  +      V   V+ +  +LT +Y
Sbjct:  304 RMLAYSSVAQVGYIVLGLAVGNVLALYGALLHVLSHALVKGGLFFIAGGVSWETGVRRVSDFVGIAKKMPLTMGAFVAAALSMIGLPPTLGFFSKWYLVLGCLEAGAW------VFVAVLVVSSLLTAVY 427          

HSP 2 Score: 40.0466 bits (92), Expect = 1.438e-15
Identity = 22/82 (26.83%), Postives = 39/82 (47.56%), Query Frame = -1
Query:  400 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVG---TVQIIYAASTSPGQRNL 636
            +K+ + P H WLPD +          +A ++ K+ AY L RI +  +  A    SP   ++G      I++ +  +  QR+L
Sbjct:  222 IKMALFPLHGWLPDAYSYTPAPVLAFMAAVMTKVSAYALYRI-LYFVTEAAGPVSPTLQVLGWMAAAGILFGSIMAIAQRDL 302          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_AGKRH (NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Agkistrodon rhodostoma GN=MT-ND4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.447e-15
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSS+SHMG +   I   T  GL+G +  +I+HG  S+ALF LA T+Y+R     L    G    +P   T + + ++ ++A P  + F +EL     +I S  F   P  +I  ++ + M++T  YS
Sbjct:   60 KSLIAYSSISHMGLVAAAIIIQTPWGLSGGMTLMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNILPMATTWWLLTNLMNIATPPTTNFTSEL-----LIMSALFNWCPTTII--MLGLSMLITASYS 184          

HSP 2 Score: 30.0314 bits (66), Expect = 5.447e-15
Identity = 14/24 (58.33%), Postives = 20/24 (83.33%), Query Frame = -1
Query:  493 MLLAGILLKMGAYGLIRINMGLLP 564
            M+LA ILLK+G YG+IR+ M ++P
Sbjct:    6 MVLAAILLKLGGYGIIRM-MQIMP 28          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: HYFB_ECOLI (Hydrogenase-4 component B OS=Escherichia coli (strain K12) GN=hyfB PE=1 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 1.508e-14
Identity = 32/107 (29.91%), Postives = 56/107 (52.34%), Query Frame = -2
Query:  111 KKRIAYSSVSHMGFIILGIGS-----------ITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAE 398
            K+ +A+S+V ++G I+L +G            +T  GL GA+  +++H L    LF  AG    R+    +++MG LA  +P       I  +A  A+P ++GF++E
Sbjct:  301 KRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISE 407          

HSP 2 Score: 44.669 bits (104), Expect = 1.508e-14
Identity = 21/84 (25.00%), Postives = 46/84 (54.76%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWF----MIVGTVQIIYAASTSPGQRNLKK 633
            K  ++P H+WLP  H  A      L++G+++K+G +G++++ M LL  A +    W+    M +G +  +     +  ++++K+
Sbjct:  221 KAGMMPLHSWLPRAHPAAPSHASALMSGVMVKIGIFGILKVAMDLL--AQTGLPLWWGILVMAIGAISALLGVLYALAEQDIKR 302          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUOM_MYCTU (NADH-quinone oxidoreductase subunit M OS=Mycobacterium tuberculosis GN=nuoM PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 43/128 (33.59%), Postives = 76/128 (59.38%), Query Frame = -2
Query:    6 IAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIY 389
            IAY+S+SH GFII GI  +T  G +G+ L +++HGL +AA+F +AG    R     + + GG+    P +   F + +MA+++LPG++ F++E +V  G  T  +++L     +T      ++L+ +Y
Sbjct:  343 IAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFLVLLG--TFSRYWLAAAFGVT-----ALVLSAVY 463          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_MOOTA (NADH-quinone oxidoreductase subunit N OS=Moorella thermoacetica (strain ATCC 39073) GN=nuoN PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 3.512e-13
Identity = 34/113 (30.09%), Postives = 59/113 (52.21%), Query Frame = -2
Query:   66 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLA--IPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFL 398
            K+ +AYSS++  G+++LGI S +  G+   +   + +   +   F  A   Y+      + +  GLA   P+     LFS+LS+A   +P M+GFV +  +F  II+ Q  +L
Sbjct:  291 KRLLAYSSIAQAGYLLLGIVSFSVLGVGAVMYYAMLYVFGNMGAFMAATAFYNNDGSDEIKDYAGLARRSPLVAALMLFSLLSLA--GIPPMAGFVGKFYLFMSIISRQYIWL 401          

HSP 2 Score: 40.0466 bits (92), Expect = 3.512e-13
Identity = 23/81 (28.40%), Postives = 39/81 (48.15%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYG-LIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD +  A       L+ +  K  A+  L+R+  G LP  HS +   F+ +  + I+     +  Q N+K+
Sbjct:  213 KVTAVPFHMWSPDVYEGAPTPVTGFLS-VASKAAAFAALVRVFFGALPDLHSFWVQLFIALAVLTIVLGNLVAIPQTNIKR 292          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: HYCC_ECOLI (Formate hydrogenlyase subunit 3 OS=Escherichia coli (strain K12) GN=hycC PE=3 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.289e-12
Identity = 36/142 (25.35%), Postives = 73/142 (51.41%), Query Frame = -2
Query:   15 KKRIAYSSVSHMGFIILGIGS-----------ITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIV---FFGIITSQKFFLMPKIVITFVMAIGMILT 398
            ++ +AY ++ ++G I+LG+G+           +   GL G +  +++H L  + LF  AG+ + R     ++++GG+   +P I     +  MA  ALP ++GF  E ++   FF +  S  F      ++  ++A+G+ +T
Sbjct:  285 QRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVAR---LLGPLLAVGLAIT 423          

HSP 2 Score: 35.4242 bits (80), Expect = 1.289e-12
Identity = 12/40 (30.00%), Postives = 23/40 (57.50%), Query Frame = -1
Query:  505 IIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINM 624
            IIP H W+P  H  A      L + +++K+G  G++ +++
Sbjct:  211 IIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSL 250          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NU4M_TRIEL6.692e-1634.09NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NU4M_ASCSU8.556e-1627.43NADH-ubiquinone oxidoreductase chain 4 OS=Ascaris ... [more]
NU4M_ARTSF1.114e-1534.95NADH-ubiquinone oxidoreductase chain 4 OS=Artemia ... [more]
NU4M_HYPHY1.130e-1533.33NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
NUON_DESAP1.438e-1526.92NADH-quinone oxidoreductase subunit N OS=Desulforu... [more]
NU4M_AGKRH5.447e-1534.09NADH-ubiquinone oxidoreductase chain 4 (Fragment) ... [more]
HYFB_ECOLI1.508e-1429.91Hydrogenase-4 component B OS=Escherichia coli (str... [more]
NUOM_MYCTU6.129e-1433.59NADH-quinone oxidoreductase subunit M OS=Mycobacte... [more]
NUON_MOOTA3.512e-1330.09NADH-quinone oxidoreductase subunit N OS=Moorella ... [more]
HYCC_ECOLI1.289e-1225.35Formate hydrogenlyase subunit 3 OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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