CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: MNHD2_STAES (Putative antiporter subunit mnhD2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mnhD2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.296e-12
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   30 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAI 398
            KK  AY  +  +GFIILG+GS T +G+NGA+  + +  ++   LFF+ G+      +     + GLA   P     F ++  A   +P  SGF  ++++F G IT+  +  +  +++T ++A+
Sbjct:  297 KKIAAYQVILSIGFIILGLGSHTISGVNGAIFYLANDIIVKTLLFFVIGSLVYMSGYRNYQYLSGLAKREPFFGVAFVVVIFAIGGVPPFSGFPGKVLIFQGAITNGNYIGLALMIVTSLIAM 419          

HSP 2 Score: 24.6386 bits (52), Expect = 1.296e-12
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = -1
Query:  517 IIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI 624
            +I F T L D H    ++  + +A I + +GA+G+I
Sbjct:  256 LIRFFTLLFDHHPSVTHTLLVFMACITMIIGAFGVI 291          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: MNHD2_STAEQ (Putative antiporter subunit mnhD2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mnhD2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.296e-12
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   30 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAI 398
            KK  AY  +  +GFIILG+GS T +G+NGA+  + +  ++   LFF+ G+      +     + GLA   P     F ++  A   +P  SGF  ++++F G IT+  +  +  +++T ++A+
Sbjct:  296 KKIAAYQVILSIGFIILGLGSHTISGVNGAIFYLANDIIVKTLLFFVIGSLVYMSGYRNYQYLSGLAKREPFFGVAFVVVIFAIGGVPPFSGFPGKVLIFQGAITNGNYIGLALMIVTSLIAM 418          

HSP 2 Score: 24.6386 bits (52), Expect = 1.296e-12
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = -1
Query:  517 IIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI 624
            +I F T L D H    ++  + +A I + +GA+G+I
Sbjct:  255 LIRFFTLLFDHHPSVTHTLLVFMACITMIIGAFGVI 290          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_SACEN (NADH-quinone oxidoreductase subunit N OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=nuoN PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.835e-12
Identity = 39/123 (31.71%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   39 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF---FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFV 398
            K+ IAYSSV+H GF+++G  ++T+ GL G +  ++++G  + A+F    L  TS       +L +  GLA   P +  +F+ L +A   +P  SGFV + +VF   +      + P +V+  V
Sbjct:  331 KRMIAYSSVAHAGFLLVGSIALTERGLAGTMFYLLAYGFTTIAIFGVISLVRTSDGEA--THLSDWAGLAKRSPVVAWVFTFLLLALAGIPMTSGFVGKFVVFEAALADG---MAPLVVVALV 448          

HSP 2 Score: 26.9498 bits (58), Expect = 2.835e-12
Identity = 12/41 (29.27%), Postives = 19/41 (46.34%), Query Frame = -1
Query:  511 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRI 633
            K  + PFHTW PD +  A  +    +A         G++R+
Sbjct:  253 KASVGPFHTWTPDVYQGAPTAVTGFMAACTKVAAFGGILRV 293          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: MRPD_BACSU (Na(+)/H(+) antiporter subunit D OS=Bacillus subtilis GN=mrpD PE=1 SV=3)

HSP 1 Score: 60.8474 bits (146), Expect = 3.685e-12
Identity = 36/126 (28.57%), Postives = 65/126 (51.59%), Query Frame = -2
Query:   18 KRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMIL 395
            K + Y+ ++ +G I+ G+   T   + GA+  +I   LI  ALF LAGT       A L +MGGL    P +  +F I +++   +P +SGFV +  +  G     +F +   I+++ ++ +  +L
Sbjct:  298 KIVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLIKGALFMLAGTLIALTGTASLHKMGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGEFTISMLILLSSLLVLYSVL 423          

HSP 2 Score: 29.6462 bits (65), Expect = 3.685e-12
Identity = 16/77 (20.78%), Postives = 32/77 (41.56%), Query Frame = -1
Query:  394 IIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 624
            I P + WLP ++     +   L   +L K+G Y + R+   +  H  +      + +  + +I+    S    N+ K
Sbjct:  222 IFPLYFWLPGSYYAPPAAISALFGALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMK 298          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_CHLCH (NADH-quinone oxidoreductase subunit N OS=Chlorobium chlorochromatii (strain CaD3) GN=nuoN PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 6.206e-12
Identity = 29/111 (26.13%), Postives = 57/111 (51.35%), Query Frame = -2
Query:   66 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFL 398
            K+ +AYSS++H G+ +LG+  +   G    +  ++S+ L++   FF+     +R     LD+  GL   +P      ++  ++ + LP   GF+ +L+VF  +I     F+
Sbjct:  321 KRLLAYSSIAHAGYALLGVIVMDKLGTQATLFYLLSYLLMNFGAFFVVVLIANRTGSESLDDYRGLGKSMPLAGAALTVFLISLVGLPPTIGFIGKLMVFSALIAKGSIFM 431          

HSP 2 Score: 33.113 bits (74), Expect = 6.206e-12
Identity = 22/88 (25.00%), Postives = 39/88 (44.32%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFS-----PWF---MIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD +  +       L+      G   L+R     LPH +++ +      WF   +I+    +IY    +  Q+N+K+
Sbjct:  235 KIGAVPFHFWAPDVYEGSPTPVTAYLSVASKAAGFALLMRFVYVALPHTNNVQAATLGIDWFTLLVILAVASMIYGNVVALWQKNVKR 322          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON2_SOLUE (NADH-quinone oxidoreductase subunit N 2 OS=Solibacter usitatus (strain Ellin6076) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.065e-12
Identity = 33/126 (26.19%), Postives = 63/126 (50.00%), Query Frame = -2
Query:   24 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFF-LAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGM 398
            K+ +AYSS+SH G+++LG+ +  DTG+ G  + ++ +  ++   F  +       I    LD++ GL    P    L  I  ++   +P  +GF+ +  +F  +I +    L   IV T  +A+ +
Sbjct:  311 KRLLAYSSISHAGYMLLGLVAGNDTGIKGIAVYVMVYTFMNLGAFLVIIAMRRASIIGEDLDDLAGLVHKSPGYAFLMLIFLLSLAGIPPTAGFLGKYYIFLALIQTGHTGL--AIVATLYVAVAI 434          

HSP 2 Score: 36.965 bits (84), Expect = 8.065e-12
Identity = 19/80 (23.75%), Postives = 35/80 (43.75%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD +  A  +    L+          L+RI +G L  A +++ P    +  + +      +  Q N+K+
Sbjct:  233 KVSAVPFHMWAPDAYEGAPTTVTAYLSVASKAASIAFLLRIFLGPLASARAVWEPLLAFIAIITLTIGNLAAINQTNIKR 312          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_CHLRE (NADH-ubiquinone oxidoreductase chain 4 OS=Chlamydomonas reinhardtii GN=ND4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 40/131 (30.53%), Postives = 66/131 (50.38%), Query Frame = -2
Query:    6 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIY 398
            KK +AYSS++HM  + L I S ++     +   +I+HGLIS ALF + G  YDR    ++    GL   +P   TLF + ++ +LA P    F+AE++    I    +       ++ +V  +  +L   Y
Sbjct:  277 KKIVAYSSIAHMSMVTLAIFSQSEFSAYSSSFLMIAHGLISPALFLIVGILYDRAHTKFILYFSGLGASMPIGSTLFFLFTLGNLAFPLFPNFIAEVLCMVSIFAVHE-------LLAYVFCVCQVLGAAY 400          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_RUTMC (NADH-quinone oxidoreductase subunit N OS=Ruthia magnifica subsp. Calyptogena magnifica GN=nuoN PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.360e-11
Identity = 30/122 (24.59%), Postives = 59/122 (48.36%), Query Frame = -2
Query:   36 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVM 398
            K+ +AYS++SH+GFI+LG  + T  G   A   ++ + L+S A F  +   +        + +  GL    P    +  I+ ++   +P + GF ++  +   ++ S  F  +  IV+ F +
Sbjct:  305 KRMLAYSTISHVGFIMLGFVAGTPIGYGAAAFYMLVYVLMSLAAFGMIILLNKQGFEIDQISDFKGLNKHAPWFALMMLIIILSMAGVPPLVGFYSKFFILQQVV-SAGFITIAVIVVIFAV 425          

HSP 2 Score: 41.9726 bits (97), Expect = 1.360e-11
Identity = 24/81 (29.63%), Postives = 44/81 (54.32%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYG-LIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            KL  +PFH W+PD +  A  S  + ++ +  K+ A+  L+RI +  L   H+ +S  FM++  + I   +  +  Q N+K+
Sbjct:  227 KLGAVPFHMWVPDVYQGAPTSVTLFISTV-PKIAAFAMLVRILVDGLDSMHAYWSDLFMVLSILSIALGSVVALMQSNIKR 306          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_AZOC5 (NADH-quinone oxidoreductase subunit N OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoN PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.361e-11
Identity = 29/105 (27.62%), Postives = 56/105 (53.33%), Query Frame = -2
Query:   87 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 398
            K+ +AYSS+ HMGF ++G+ + T+ G+ G +L +  + +++   F  +     D      ++++ GLA   P +    + L  +   +P ++GFVA+  VF   I
Sbjct:  294 KRLLAYSSIGHMGFALVGLAAGTEQGVTGVLLYMAIYVVMTLGSFTCVLAMRRDGRSVETIEDLAGLARTKPLMALALAALMFSLAGIPPLAGFVAKYYVFLAAI 398          

HSP 2 Score: 35.8094 bits (81), Expect = 1.361e-11
Identity = 20/80 (25.00%), Postives = 31/80 (38.75%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD +  A        A           +R+ +  LPH    +      V    +   A  + GQRN+K+
Sbjct:  216 KVSAVPFHMWTPDVYEGAPTPVTAFFATAPKVAAMAVFVRVAVEALPHVTHSWQQIVTFVSIASMALGAFAAIGQRNIKR 295          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON1_RHIME (NADH-quinone oxidoreductase subunit N 1 OS=Rhizobium meliloti GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.293e-11
Identity = 31/113 (27.43%), Postives = 63/113 (55.75%), Query Frame = -2
Query:   66 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF--FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFL 398
            K+ +AYSS+ HMG+ ++G+ + +  G+ G +L ++ + +++   F   LA    +      +D++ GL+   P + T+ +IL  +   +P ++GF A+  VF   I +Q + L
Sbjct:  297 KRLMAYSSIGHMGYALVGLAAGSMAGVRGVILYMLIYMVMTLGTFACILAMRRREGEHVEGIDDLAGLSQTNPFMATVLTILMFSLAGIPPLAGFFAKYFVFVAAIEAQLYGL 409          

HSP 2 Score: 30.8018 bits (68), Expect = 2.293e-11
Identity = 21/82 (25.61%), Postives = 37/82 (45.12%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTH-GEAHYSTCMLLAGILLKMGAYG-LIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD + G     T    AG   K+ A   L+RI +       + +    + +    ++  +  + GQRN+K+
Sbjct:  219 KISAVPFHMWTPDVYEGAPTPVTAFFAAG--PKVAAISILVRIVINAFEPVVADWQQIIVFISIASMLLGSFAAIGQRNIKR 298          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
MNHD2_STAES1.296e-1230.08Putative antiporter subunit mnhD2 OS=Staphylococcu... [more]
MNHD2_STAEQ1.296e-1230.08Putative antiporter subunit mnhD2 OS=Staphylococcu... [more]
NUON_SACEN2.835e-1231.71NADH-quinone oxidoreductase subunit N OS=Saccharop... [more]
MRPD_BACSU3.685e-1228.57Na(+)/H(+) antiporter subunit D OS=Bacillus subtil... [more]
NUON_CHLCH6.206e-1226.13NADH-quinone oxidoreductase subunit N OS=Chlorobiu... [more]
NUON2_SOLUE8.065e-1226.19NADH-quinone oxidoreductase subunit N 2 OS=Solibac... [more]
NU4M_CHLRE9.785e-1230.53NADH-ubiquinone oxidoreductase chain 4 OS=Chlamydo... [more]
NUON_RUTMC1.360e-1124.59NADH-quinone oxidoreductase subunit N OS=Ruthia ma... [more]
NUON_AZOC51.361e-1127.62NADH-quinone oxidoreductase subunit N OS=Azorhizob... [more]
NUON1_RHIME2.293e-1127.43NADH-quinone oxidoreductase subunit N 1 OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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