CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.053e-22
Identity = 75/260 (28.85%), Postives = 124/260 (47.69%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVH--CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSN--------LKG----AVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            K A+ITG   GIG   AR  +K GA +++            + +            +H   D+TK  +I + +     ++G  DI+ NNAG   +    I D    +++RI+++NL  +F   + A   MK  G G II+ AS  G++      AY ++KHG++GL K  A+E+   G+ VN + P  V TPL +   ++ D       +         LKG      +  E +A  ALYL  D++  ++G ++ +DGG+
Sbjct:    3 KTAVITGSTSGIGLAIARTLAKAGANIVLNGFG---APDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGV--QFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEK--QIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGW 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.600e-22
Identity = 79/252 (31.35%), Postives = 125/252 (49.60%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAK---DFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L+GK AL+TG   GIG+  A+  +  GA ++       L E+                    D++K + I+++    + +  ++DI+ NNAG +   K    D  +  ++ +L++NL   F+ T+ A R M   G G II+ AS+    GG    AY +SKH + GL K+ A E    GI+VN ++P  +ST   K   D  K  +D L  + +   G   + +DI   A++L S  S  V+GH L VDGG+
Sbjct:   10 LKGKTALVTGPGTGIGQGIAKALAGAGADIIGTSHTSSLSETQ----QLVEQEGRIFTSFTLDMSKPEAIKDSA-AELFENRQIDILVNNAGIIHREKAE--DFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANTKPIRDDEKRNEDILKRIPAGRWG---QADDIGGTAVFLASRASDYVNGHILAVDGGW 251          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.600e-22
Identity = 69/261 (26.44%), Postives = 128/261 (49.04%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLG-ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKD--------FLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKC-VSGHNLVVDGGFAI 847
            L  +VAL+TG +RGIG+ TA   +  G KV++   +     ++V  +I            V  +V    +++  + T + ++ ++D++ NNAG   +    +L     +++ ++ +NL G FL TK  +++M     G II+  SV G++G      Y+++K G++G  K  A EL   G+ VN V+P  ++T + ++        F+ LA  G             +PE++A    +L +D +   ++G    VDGG  +
Sbjct:    4 LTAQVALVTGASRGIGKATALALAATGMKVVVNYAQSSTAADAVVAEIIANGGEAIA---VQANVANADEVDQLIKTTLDKFSRIDVLVNNAGITRDTL--LLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAEPILQFIPLARYG-------------QPEEVAGTIRFLATDPAAAYITGQTFNVDGGMVM 246          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.619e-22
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQA----EFERILSINLVGAFLGTKHAARVM------KPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            R ++G VA+ITGGA G+G  TA+     GA  ++ D+ +  GE+  K +           +   +VT EK+++ A+  A  ++G++D+  N AG    +K      +Q     +F+R++++NL+G F   +  A VM      +   RG II+TASV    G     AY++SK G++G+    A +L   GIRV  ++P + +TPL
Sbjct:    6 RSVKGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKKLGGNCI------FAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFATPL 205          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_RICPR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia prowazekii GN=fabG PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.619e-22
Identity = 75/254 (29.53%), Postives = 126/254 (49.61%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            L GK +LITG + GIG   ARL  K G+KV+I+   ++  +S+   +              C++  +++  N ++        LDI+  NAG T D +   + D D   F++++ INL   F+  + A + M     G II+ +S+ GI G      Y +SK GL+G+ K+ + E+   GI VN V+P  + + +     KL +     +   +  G    PED+A A  +L S+ +  ++G  L V+GG  +V
Sbjct:    4 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEV------CNLANKEECSNLISKT----SNLDILVCNAGITSDTLAIRMKDQD---FDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD---KLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGMLMV 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.126e-21
Identity = 76/249 (30.52%), Postives = 125/249 (50.20%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLK-LADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L  KVAL+T    GIG   AR  ++ GA V+I+  K    ++V + +            V C V K +D E  VN A+  +  +DI+ +NA  V+    N++D  +  + ++LSIN+  + +  K     M+  G GS++  +SV G +   +   Y  SK  LLGL KN A EL    IRVNC++P ++ T  +    K  A + +      ++  + +PED      +L S+++  ++G  +VV GG
Sbjct:   12 LANKVALVTASTDGIGLAIARRLAEDGAHVVISSRKQ---QNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQGIDILVSNAA-VNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEMIKETMQIR-RLGKPEDCVGIVSFLCSEDASYINGETVVVGGG 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YLX6_SCHPO (Uncharacterized oxidoreductase C922.06 OS=Schizosaccharomyces pombe GN=SPAC922.06 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 80/255 (31.37%), Postives = 126/255 (49.41%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGR-GSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKD-FLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIVN 853
            ++G+V LITG A GIG+   ++F++ G +V   DI D    S  +D             +  DV+K   IE A+   +   G +D++ NNAG  D+     L ++   ++  +S+ L G +L  ++    M   G+ GSI++  SV G I    + AY+++K GL  L K  AV  G  GIRVN  +P  + +P   + F K  D G         G +  PED+A A ++L   ++  ++G  L VDGG    N
Sbjct:    3 VEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDIVD---PSKVQDAALA---------LQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHE--SWDHDVSLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGSVNGHI-YLGSPAYSAAKAGLENLTKALAVRYGPLGIRVNVCAPGTIWSPAWDERFKKHPDVGDRMKRWYPVGRLGTPEDVARAVIFLADSKNSFITGTTLYVDGGLLAGN 242          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCD2_HUMAN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 69/206 (33.50%), Postives = 105/206 (50.97%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQA----EFERILSINLVGAFLGTKHAARVM------KPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            R ++G VA+ITGGA G+G  TA      GA  ++ D+ +  GE+  K +           +   DVT EKD++ A+  A  ++G++D+  N AG     K   L   Q     +F+R+L +NL+G F   +  A  M      +   RG II+TASV    G     AY++SK G++G+    A +L   GIRV  ++P +  TPL
Sbjct:    6 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCV------FAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 205          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.508e-21
Identity = 82/258 (31.78%), Postives = 117/258 (45.35%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGR-GSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLA----------KDFLKLADDGLGGMYSNLKGAVLE--PEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            KVALITGGA GIG    R F+  G  V++AD+  +  + +  +I            V  DVTKE+D+++A   A   YG +DI+ NNAG          +    E+   +++   G FL  + A + MK   R GS++   S   +  G    AY+S K     L +  A E G FGIRVN V P  V    A               +  D L   Y      ++   PEDIAEA  +  S +++  +G  + VDGG
Sbjct:  428 KVALITGGAGGIGSAACRRFAAEGGHVIVADLNIEGAQKIAGEINDAYGKGRAMA-VKMDVTKEEDVQSAFERAALAYGGIDIVVNNAGLA--TSSPFDETSLKEWNLNMNVLGTGYFLVAREAFKQMKHQNRGGSMVFVGSKNSVYAGKNASAYSSVKALETHLARCIAAEGGEFGIRVNSVLPDAVLQGSAIWGSSWREERAAAYGIEPDQLEEHYRKRTALLVNIYPEDIAEAIAFFASSKAEKTTGCMITVDGG 682          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.508e-21
Identity = 74/246 (30.08%), Postives = 121/246 (49.19%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLV----GAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAV--ELGRFGIRVNCVSPYVVSTPLAKDFLKLADDG-----LGGMYSNLK-GAVLEPEDIAEAALYLGSDE 796
            + GKVAL+TG A+GIG   A      GAKV + D   + G   CK             ++ CDV  ++ + +     V  +G+LDI+ NNAG           N++  +E+ L INLV    G +LG  + ++     G G II+ +S+ G++  A    Y +SKHG++G  ++ A+  +L   G+R+N + P  V+T + +   K  + G      G +   +K   +L+PE IA   + L  D+
Sbjct:    3 VNGKVALVTGAAQGIGRAFAEGLLHKGAKVALVDWNLEAGVK-CKAALDEEFEPQKTLFIQCDVADQEQLRDTFTKVVDYFGRLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQHGGEG-GVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGPYIEYTGHIKDMMKCYGILDPEMIANGLITLIEDD 236          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
BDHA_RHIME5.053e-2228.85D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
KDUD_BACSU6.600e-2231.352-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
FABG1_SYNY36.600e-2226.443-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
HCD2_RAT8.619e-2232.043-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
FABG_RICPR8.619e-2229.533-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHRS4_RAT1.126e-2130.52Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
YLX6_SCHPO1.470e-2131.37Uncharacterized oxidoreductase C922.06 OS=Schizosa... [more]
HCD2_HUMAN1.470e-2133.503-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sap... [more]
YUXG_BACSU2.508e-2131.78Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
PGDH_CAVPO2.508e-2130.0815-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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