CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YGFF_ECOLI (Uncharacterized oxidoreductase ygfF OS=Escherichia coli (strain K12) GN=ygfF PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 74/256 (28.91%), Postives = 129/256 (50.39%), Query Frame = 2
Query:  107 VALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYV-HCDVTKEKDIENAVNTAVTQYGK-LDIMFNNAGTVDEVKPNILDNDQAE-FERILSINLVGAFLGTKHAAR--VMKPAGR-GSIISTASVCGIIGGAATHA-YASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVL-----EPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +AL+TGG+RGIG  TA L ++ G  V + + + +L     +++           +V   D++ E  +  A+ TA+ Q+ + L  + NNAG +       ++N  AE   R+LS N+ G FL  + A +   +K  G  G+I++ +SV   +G    +  YA+SK  +  L    ++E+   GIRVNCV P  + T +       A  G  G    +K  +      + E++A+A ++L SD++  V+G  + + GG
Sbjct:    3 IALVTGGSRGIGRATALLLAQEGYTVAV-NYQQNL--HAAQEVMNLITQAGGKAFVLQADISDENQVV-AMFTAIDQHDEPLAALVNNAGIL--FTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMH------ASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFIDLAGG 246          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YAY8_SCHPO (Uncharacterized oxidoreductase C4H3.08 OS=Schizosaccharomyces pombe GN=SPAC4H3.08 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 67/261 (25.67%), Postives = 123/261 (47.13%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGES-VCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLA-----KDFLKLADD-GLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIVN 853
            +L  K  L+TGG  GIG+  A +F++ G+ ++I+ + ++  ++ V +D+               D  K  +  + V+ A+ + G +D++ NN     +V  +I D D  +++     N+   F  TK A   MK     SI++ +S+   +G      Y S+K  +    +  + +  + GIRVN V+P  + TPL      K+ ++L+D   LG M         +P ++A   L+L   +   ++G  L  +GG  I N
Sbjct:   39 KLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTRDLIEREGRNCWIWEGKLD--KSDNCRDLVDFALKKLGWIDVLVNNIA-YQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSGS--SIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPLVSSTFPKEKIELSDQVPLGRMG--------QPVEVASCYLFLACSDGGYMTGQTLHPNGGTVINN 286          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DECR_HUMAN (2,4-dienoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=DECR1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 71/259 (27.41%), Postives = 118/259 (45.56%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNA-----GTVDEVKPNILDNDQAEFERILSINLVG-AFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDG------LGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            QGKVA ITGG  G+G+    L S  GA+ +IA  K D+ ++  + I            + CDV     ++N V+  +   G  +I+ NNA        + + PN        ++ I  I L G AF+  +   +++K     + +S  ++    G       AS+K G+  + K+ A E G++G+R N + P  + T  A  F +L   G      +G +     G V   E++A  A +L SD +  ++G  +  DGG
Sbjct:   58 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHA--IQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPN-------AWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGA--FSRLDPTGTFEKEMIGRIPCGRLGTV---EELANLAAFLCSDYASWINGAVIKFDGG 302          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: LIGD_PSEPA (C alpha-dehydrogenase OS=Pseudomonas paucimobilis GN=ligD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 64/236 (27.12%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGR-GSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAK-DFLKLADDGLGGMYSNLKGAV---------LEPEDIAEA 772
            Q +VA ITGGA G G   A++F + GAK+++AD++    E+V K +            +  D+   +    A +     +G+   + +N   V+   P I      +F+ I+ +NL G   G       M  +GR G I++ +S+ G +G A    Y+++K   + LM+     L ++GI V+  +P  + + +A+   L+ A  G  G   N +            LEPE +AEA
Sbjct:    5 QDQVAFITGGASGAGFGQAKVFGQAGAKIVVADVR---AEAVEKAVAELEGLGITAHGIVLDIMDREAYARAADEVEAVFGQAPTLLSNTAGVNSFGP-IEKTTYDDFDWIIGVNLNGVINGMVTFVPRMIASGRPGHIVTVSSLGGFMGSALAGPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNIAEASRLRPAKYGTSGYVENEESIASLHSIHQHGLEPEKLAEA 236          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB13_HUMAN (17-beta hydroxysteroid dehydrogenase 13 OS=Homo sapiens GN=HSD17B13 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVE---LGRFGIRVNCVSPYVVSTPLAKD 685
            + + G++ LITG   GIG  T   F+K  + +++ DI     E    +            YV  D +  ++I  ++N    + G + I+ NNAGTV     ++L     E  +   +N++G F  TK     M     G I++ ASVCG  G      Y SSK   +G  +    E   LG+ GI+ +C+ P  V+T   K+
Sbjct:   32 KSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHA--YV-VDCSNREEIYRSLNQVKKEVGDVTIVVNNAGTV--YPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNTGFTKN 228          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PECR_PONAB (Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo abelii GN=PECR PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.969e-14
Identity = 60/252 (23.81%), Postives = 115/252 (45.63%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXY--VHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVV-STPLAKDFLKLADDGLGGMYSNLKG-AVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            LQG+VA++TGGA GIG+   +   + G+ V+IA  K +  +S   ++              + C++  E+++ N V + +  +GK++ + NN G   +            +  +L  NL G F   K           GSI++           A H+  +++ G+  L K+ A+E    G+R+NCV+P V+ S    +++           +  +    +  PE+++    +L S  +  ++G ++ VDGG
Sbjct:   16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAGELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDIFGKINFLVNNGG--GQFLSLAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVSIKTGLPLAVHS-GAARAGVYNLTKSLALEWACSGVRINCVAPGVIYSQTAVENYGSYGQSFFEESFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: NAHB_PSEU8 (1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase OS=Pseudomonas sp. (strain C18) GN=doxE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.969e-14
Identity = 74/260 (28.46%), Postives = 109/260 (41.92%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKP--NILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVST----PLAKDFLKLADDGLGGMYSNLKGA-----VLEPEDIAEAALYLGS-DESKCVSGHNLVVDGGFAI 847
            +V  ITG   GIG    R F   G  V      ++    +CK+             V  DV      E  +   + ++G LD    NAG  D +       +   + F+ I  IN+   F G   A   +K    GS++ TASV     G     Y +SKH +LG++K  A EL    +RVN VSP    T    P +  F K+    + G+   +KG        +PED+    L L S  + K ++G  + +DGG A+
Sbjct:    5 QVVSITGAGSGIGLELVRSFKSAGYYVSALVRNEEQEALLCKEFKDALEI------VVGDVRDHATNEKLIKQTIDRFGHLDCFIANAGIWDYMLSIEEPWEKISSSFDEIFDINVKSYFSGISAALPELKKTN-GSVVMTASVSSHAVGGGGSCYIASKHAVLGMVKALAYELAP-EVRVNAVSPGGTVTSLCGPASAGFDKMHMKDMPGIDDMIKGLTPLGFAAKPEDVVAPYLLLASRKQGKFITGTVISIDGGMAL 256          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB11_PONAB (Estradiol 17-beta-dehydrogenase 11 OS=Pongo abelii GN=HSD17B11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.969e-14
Identity = 65/246 (26.42%), Postives = 103/246 (41.87%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADI-KDDLGESV--CKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRF---GIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCV 808
            + + G++ LITG   GIG  TA  F+K  +K+++ DI K  L E+   CK +               D +  +DI +A      + G + I+ NNAG V     ++      + E+   +N++  F  TK     M     G I++ AS  G +      AY SSK   +G  K    EL      G++  C+ P  V+T   K+             S   G  LEPE++    ++    E K +
Sbjct:   32 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFV------VDCSNREDIYSAAKKVKAEIGDVSILVNNAGVV--YTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMMKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN------------PSTSLGPTLEPEEVVNRLMHGILTEQKMI 257          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.969e-14
Identity = 74/261 (28.35%), Postives = 112/261 (42.91%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVL-IADIKDDLG---------ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHA-YASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            RL G+ AL+TG  +GIG    +     GA+V+ ++  + DL          E+VC D+                         A   A+   G +D++ NNA  V  ++P  L+  +  ++   S+NL      ++  AR +   G   +I   S      G   H+ Y S+K  L  L K  AVELG   IRVN V+P VV TP+ +            +     G   E E++ +  L+L SD S   +G  + VDGGF
Sbjct:    4 RLAGRRALVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVRECPGVETVCVDLADW---------------------EATEQALGGVGPVDLLVNNAA-VAFLQP-FLEVTKEAYDMSFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRSSMTTGSTVPVDGGF 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: MTDH_CLAHE (Probable NADP-dependent mannitol dehydrogenase OS=Cladosporium herbarum PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.878e-14
Identity = 74/263 (28.14%), Postives = 114/263 (43.35%), Query Frame = 2
Query:   95 LQGKVALITG--GARGIGECTARLFSKHGAKVLIADIKDDLG-ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATH--AYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL---------KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L+GKV ++TG  G +G+G   AR  ++ GA V I       G E   K++              C V   +  E  V   V  +G++D    NAG   +    ILD     +  ++ ++L G F   K      K  G GS++ TAS+ G I        +Y  +K G + + ++ A E   F  RVN +SP  + T L+ DF+          +   G  G+   LKGA           +Y  SD S   +G +L++DGG+
Sbjct:   18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAY--KCQVDSYESCEKLVKDVVADFGQIDAFIANAGATAD--SGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDFA-RVNSISPGYIDTGLS-DFVPKETQQLWHSMIPMGRDGLAKELKGAY----------VYFASDASTYTTGADLLIDGGY 264          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
YGFF_ECOLI1.333e-1428.91Uncharacterized oxidoreductase ygfF OS=Escherichia... [more]
YAY8_SCHPO1.333e-1425.67Uncharacterized oxidoreductase C4H3.08 OS=Schizosa... [more]
DECR_HUMAN1.333e-1427.412,4-dienoyl-CoA reductase, mitochondrial OS=Homo s... [more]
LIGD_PSEPA2.274e-1427.12C alpha-dehydrogenase OS=Pseudomonas paucimobilis ... [more]
DHB13_HUMAN2.274e-1428.7117-beta hydroxysteroid dehydrogenase 13 OS=Homo sa... [more]
PECR_PONAB2.969e-1423.81Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo a... [more]
NAHB_PSEU82.969e-1428.461,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase... [more]
DHB11_PONAB2.969e-1426.42Estradiol 17-beta-dehydrogenase 11 OS=Pongo abelii... [more]
DCXR_BOVIN2.969e-1428.35L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV... [more]
MTDH_CLAHE3.878e-1428.14Probable NADP-dependent mannitol dehydrogenase OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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