CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: MOAE_KLEAE (Protein moaE OS=Klebsiella aerogenes GN=moaE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.878e-14
Identity = 72/260 (27.69%), Postives = 112/260 (43.08%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQ-YGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKD----FLKLADDGLGGMYSNLKGAV-----LEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIVN 853
            +V +ITGG  GIG   ARL    G +V I   +D +  +V  +             V    T           + T+  G +      AG      P     ++ E    L  NL  AF   + A      A RG+++  AS+  +  G     Y ++KH L+GLM++ A + G  G+R N + P  V+TP+A +     ++     L   Y  +   V       PE+IA+A  +L S ++  +SG  LV DGG +IV+
Sbjct:    3 RVVVITGGGTGIGAACARLMHPAGERVFITGRRDAV-RAVANETGATAL-------VAMPPTARCGASGCCRRSSTRPAGLMSSSAAPAGWATAPPPRPATANERE---ALDGNLTSAFASVR-ACLPSLIARRGNVLFVASIASLAAGPQACGYVTAKHALIGLMRSVARDYGPQGVRANAICPGWVTTPMADEEMHPLMQAEGLSLTEAYQRVCRDVPLRRPASPEEIAQACQFLCSPQAAIISGATLVADGGASIVD 250          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_AGGAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aggregatibacter actinomycetemcomitans GN=fabG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.065e-14
Identity = 70/248 (28.23%), Postives = 121/248 (48.79%), Query Frame = 2
Query:  113 LITGGARGIGECTARLFSKHGAKVLI-ADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGR----GSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            LITG +RGIG+  A   ++ G  +++    + +  E+V + +           +   DV+   +  + +   V  +G    +  NAG T D   P + D D   ++R+L  NL G F    H   +M P  R    G I+   SV G+IG      Y++SK G++G  K  AVEL +  I VNCV+P ++ T +  + + + D+ L  + +   G   +PE++A A  +L  +++  V+   + V+GG
Sbjct:    6 LITGSSRGIGKAIALRLAQAGFDIVVHCRSRIEEAEAVAQAVRELGQNARVLQF---DVSCRSEAADKLTADVEAHGAYYGVVLNAGLTRDNAFPALTDED---WDRVLRTNLDG-FYNVLHP--IMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGIIGAAKALAVELAKRKITVNCVAPGLIDTDILDENVPI-DEILKMIPAGRMG---DPEEVAHAVNFLMGEKAAYVTRQVIAVNGG 240          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB11_MACFA (Estradiol 17-beta-dehydrogenase 11 OS=Macaca fascicularis GN=HSD17B11 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.065e-14
Identity = 63/231 (27.27%), Postives = 99/231 (42.86%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADI-KDDLGESV--CKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRF---GIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDI 763
            + + G++ LITG   GIG  TA  F+K  +K+++ DI K  L E+   CK +               D +  +DI ++      + G + I+ NNAG V     ++     A+ E+   +N++  F  TK     M     G +++ AS  G I      AY SSK   +G  K    EL      G++  C+ P  V+T   K+             S   G  LEPE++
Sbjct:   32 KSVAGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVYTFV------VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV--YTSDLFATQDAQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHVVTVASAAGHISVPFLLAYCSSKFSAVGFHKALTDELAALQITGVKTTCLCPNFVNTGFIKN------------PSTSLGPALEPEEV 242          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: NAHB_PSEPU (1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase OS=Pseudomonas putida GN=nahB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.615e-14
Identity = 74/260 (28.46%), Postives = 109/260 (41.92%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKP--NILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL----AKDFLKLADDGLGGMYSNLKGA-----VLEPEDIAEAALYLGS-DESKCVSGHNLVVDGGFAI 847
            +V  ITG   GIG    R F   G  V      ++    +CK+             V  DV      E  +   + ++G LD    NAG  D +       +   + F+ I  IN+   F G   A   +K    GS++ TASV     G     Y +SKH +LG++K  A EL    +RVN VSP    T L    +  F K+    + G+   +KG        +PED+    L L S  + K ++G  + +DGG A+
Sbjct:    5 QVVSITGAGSGIGLELVRSFKSAGYYVSALVRNEEQEALLCKEFKDALEI------VVGDVRDHATNEKLIKQTIDRFGHLDCFIANAGIWDYMLSIEEPWEKISSSFDEIFDINVKSYFSGISAALPELKKTN-GSVVMTASVSSHAVGGGGSCYIASKHAVLGMVKALAYELAP-EVRVNAVSPGGTVTSLCGSASAGFDKMHMKDMPGIDDMIKGLTPLGFAAKPEDVVAPYLLLASRKQGKFITGTVISIDGGMAL 256          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHR11_CHICK (Dehydrogenase/reductase SDR family member 11 OS=Gallus gallus GN=DHRS11 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.615e-14
Identity = 63/238 (26.47%), Postives = 113/238 (47.48%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-FERILSINLVGAFLGTKHAARVMKPAG--RGSIISTASVCG--IIGGAATHAYASSKHGLLGLMKNTAVEL--GRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYL 784
            R  G+VAL+TG + GIG   AR   +HG KV+      D  E +  +            Y  CD++ E++I +  +   T +  +D+  NNAG     +P  L + + E +  ++ +N++   + T+ A + MK      G II+  S+ G  ++  +  H Y+++K+ +  L +    EL   +  IR  C+SP +V T  A        +     Y +++   L+ ED+A A +Y+
Sbjct:    3 RWTGRVALVTGASVGIGAAVARALVQHGMKVVGCARSVDKIEKLAAECQSAGYPGTLIPY-KCDLSNEEEILSMFSAIKTLHQGVDVCINNAGL---ARPEPLLSGKTEGWRTMIDVNVMAVSICTREAYQSMKERNIDDGHIININSMNGHSVVPQSVVHFYSATKYAVTALTEGLRQELREAKTHIRATCISPGLVETGFAFKLHDNDPERAAATYESIR--CLKAEDMANAVIYV 234          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB11_RAT (Estradiol 17-beta-dehydrogenase 11 OS=Rattus norvegicus GN=Hsd17b11 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.615e-14
Identity = 63/238 (26.47%), Postives = 105/238 (44.12%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADI-KDDLGESVCKDIXXXXXXXXXXXYVH---CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGL---MKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALY 781
            + + G++ LITG   GIG  TA  F+K   K+++ DI K+ + E+  K              VH    D ++ ++I +AV     + G + I+ NNAG V     ++      + E+   +N++  F  TK     M     G +++ AS  G        AY SSK   +G    + +    LG  G+R +C+ P  ++T     F+K     L        G  LEPE++ E  ++
Sbjct:   32 KSVAGEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAK-------CRKLGAQVHPFVVDCSQREEIYSAVRKVKEEVGDVSILVNNAGVV--YTADLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMMKNNHGHVVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGCTGVRTSCLCPNFINT----GFIKNPSTNL--------GPTLEPEEVVEHLMH 248          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB11_HUMAN (Estradiol 17-beta-dehydrogenase 11 OS=Homo sapiens GN=HSD17B11 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.615e-14
Identity = 64/246 (26.02%), Postives = 103/246 (41.87%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADI-KDDLGESV--CKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRF---GIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCV 808
            + + G++ LITG   GIG  TA  F+K  +K+++ DI K  L E+   CK +               D +  +DI ++      + G + I+ NNAG V     ++      + E+   +N++  F  TK     M     G I++ AS  G +      AY SSK   +G  K    EL      G++  C+ P  V+T   K+             S   G  LEPE++    ++    E K +
Sbjct:   32 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFV------VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV--YTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN------------PSTSLGPTLEPEEVVNRLMHGILTEQKMI 257          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PHBB_ZOORA (Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=phbB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.639e-14
Identity = 63/246 (25.61%), Postives = 108/246 (43.90%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL-KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +VAL+TGG+RGIG   +      G KV  +   +D       D                DV+  +     +       G +D++ NNAG   +   + +  DQ  +  +++ NL G F  T      M+    G I++ +S+ G  G      Y+++K G LG  K  A E    GI VN + P  + T + +    K+ ++ +        G + EP++IA   ++L SDE+  ++G  +  +GG
Sbjct:    3 RVALVTGGSRGIGAAISIALKAAGYKVAASYAGND-------DAAKPFKAETGIAVYKWDVSSYEACVEGIAKVEADLGPIDVLVNNAGITKDAMFHKMTPDQ--WNAVINTNLTGLFNMTHPVWSGMRDRSFGRIVNISSINGQKGQMGQANYSAAKAGDLGFTKALAQEGAAKGITVNAICPGYIGTEMVRAIPEKVLNERIIPQIP--VGRLGEPDEIARIVVFLASDEAGFITGSTISANGG 237          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.639e-14
Identity = 62/208 (29.81%), Postives = 93/208 (44.71%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGG 718
            L  KVAL+T    GIG   AR  ++  A V+++  K    ++V + +              C V K +D E  V  AV  +G +DI+ +NA  V+    +++D  +  +++ L IN+    L TK     M+  G GS++  +S+           Y  SK  LLGL    A+EL    IRVNC         L  D  +LA  G  G
Sbjct:   28 LTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQ---QNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAA-VNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNC---------LHLDLSRLASAGCSG 222          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.128e-13
Identity = 68/257 (26.46%), Postives = 117/257 (45.53%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIA-----DIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQY-GKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLAD--DGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L+G  AL+TGG+RGIG       +  GA V        ++ D L +   K                CD++   + +  +NT    + GKL+I+ NNAG V  +     D    ++  I+SIN   A+  +  A   +K + RG+++  +SV G +       Y ++K  +  L +  A E  +  IRVN V P V++T L +  ++  +  + L  +        + EP+++A    +L    +  V+G  + VDGG
Sbjct:    7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASV--------CDLSSRSERQELMNTVANHFHGKLNILVNNAGIV--IYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
MOAE_KLEAE3.878e-1427.69Protein moaE OS=Klebsiella aerogenes GN=moaE PE=3 ... [more]
FABG_AGGAC5.065e-1428.233-oxoacyl-[acyl-carrier-protein] reductase OS=Aggr... [more]
DHB11_MACFA5.065e-1427.27Estradiol 17-beta-dehydrogenase 11 OS=Macaca fasci... [more]
NAHB_PSEPU6.615e-1428.461,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase... [more]
DHR11_CHICK6.615e-1426.47Dehydrogenase/reductase SDR family member 11 OS=Ga... [more]
DHB11_RAT6.615e-1426.47Estradiol 17-beta-dehydrogenase 11 OS=Rattus norve... [more]
DHB11_HUMAN6.615e-1426.02Estradiol 17-beta-dehydrogenase 11 OS=Homo sapiens... [more]
PHBB_ZOORA8.639e-1425.61Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=... [more]
DR4L2_HUMAN8.639e-1429.81Dehydrogenase/reductase SDR family member 4-like 2... [more]
TRN2_DATST1.128e-1326.46Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
back to top