CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BPHB_PSEPU (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas putida GN=bphB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.514e-13
Identity = 77/282 (27.30%), Postives = 123/282 (43.62%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIAD--------IKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVD------EVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKP---AGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGM------YSNLKGAVLEPEDIAEAALYLGS-------DESKCVSGHNLVVDGGFAI 847
            +L G+V LITGGA G+G      F    AKV + D        ++ D G++V                V  DV   +D + A +  V ++GK+D +  NAG  D      ++    LD   A F+ +  IN+ G      HA +   P   A RG++I T S  G         Y ++KH ++GL++  A EL  + +RVN V P  +++    D    +  G+GG        +++  +VL    + EA  Y G+        ++   +G  L  DGG  +
Sbjct:    2 KLTGEVVLITGGASGLGRALVDRFVAERAKVAVLDKSAERLAQLETDHGDNVLG--------------VTGDVRSLEDQKQAASRCVAKFGKIDTLIPNAGIWDYSTALIDLPEESLD---AAFDEVFHINVKGYI----HAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAVVGLVRELAFELAPY-VRVNGVGPGGINS----DLRGPSSLGMGGKAISTVPLADMLKSVLPIGRMPEAEEYTGAYVFFATRGDAAPATGALLNYDGGLGV 257          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BPHB_BURXL (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=bphB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.514e-13
Identity = 66/233 (28.33%), Postives = 103/233 (44.21%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLI--------ADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVD------EVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKP---AGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKG 739
            +L+G+  LITGGA G+G      F   GAKV +        A+++ D G++V   +               DV   +D + A +  V ++GK+D +  NAG  D      ++    LD   A F+ +  IN+ G      HA +   P   A RG++I T S  G         Y ++KH ++GL++  A EL  + +RVN V                   G GG+ S+L+G
Sbjct:    2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVG--------------DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLD---AAFDEVFHINVKGYI----HAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELAPY-VRVNGV-------------------GSGGINSDLRG 193          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: SORD_KLEPN (Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella pneumoniae GN=sorD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 52/197 (26.40%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGT------VDEVKP-NILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVV 664
            L+  V ++TGGA GIG          GA V + DI                       +   D++   +++  ++  + ++ ++D + NNAG       VDE  P    + ++A FE++++IN  G F  ++  AR M     G I++ +S  G+ G      YA++K  L    ++ + ELG++GIRV  V+P ++
Sbjct:    7 LKDNVIIVTGGASGIGLAIVDELLSQGAHVQMIDIHGG----------DRHHNGDNYHFWSTDISSATEVQQTIDAIIQRWSRIDGLVNNAGVNFPRLLVDEKAPAGRYELNEAAFEKMVNINQKGVFFMSQAVARQMVKQRAGVIVNVSSESGLEGSEGQSCYAATKAALNSFTRSWSKELGKYGIRVVGVAPGIL 193          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB13_RAT (17-beta hydroxysteroid dehydrogenase 13 OS=Rattus norvegicus GN=Hsd17b13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 63/237 (26.58%), Postives = 104/237 (43.88%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADI-KDDLGESVCKDIXXXXXXXXXXXYVH---CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVE---LGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAAL 778
            + + G+  LITG   GIG  TA  F+K  +++++ DI K  + E+  K              VH    D +   +I  +V+    + G ++I+ NNAG +     ++L     E  +   +N++G F   K     M     G I++ ASVCG         Y SSK   +G  +    E   LG+ GI+ +C+ P  V+T   K+             S     VLEP+++A + +
Sbjct:   32 KSVAGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDISKHGVEETAAK-------CRKLGAVVHVFVVDCSNRAEIYKSVDQVKKEVGDIEIVVNNAGAI--YPADLLSTKDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHRVIPYLIPYCSSKFAAVGFHRALTAELDTLGKTGIKTSCLCPVFVNTGFTKN------------PSTRLWPVLEPDEVARSLI 247          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BPHB_PSES1 (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas sp. (strain KKS102) GN=bphB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 57/198 (28.79%), Postives = 87/198 (43.94%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNI---LDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            +L  +VAL+TGG  G+G      F   GA+V + D      +S  +              +  DV    D + A    V  +GK+D +  NAG  D   P +    D   A F+ +  IN+ G  L  K     +  + RGS++ T S  G         Y  +KH ++G+++  A EL    +RVN V+P  +ST L
Sbjct:    2 QLNNEVALVTGGGSGLGRAIVDRFVAEGARVAVLD------KSAARLQELQAAHGAKVLGIEGDVRVLADHQKAARECVAAFGKIDCLIPNAGIWDYSMPLVDIPDDRIDAAFDEVFHINVKGYLLAVKACLPALVQS-RGSVVFTISNAGFYPNGGGPLYTGAKHAVVGMVRELAYELAPH-VRVNGVAPGGMSTDL 191          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: SRLD_ECOLI (Sorbitol-6-phosphate 2-dehydrogenase OS=Escherichia coli (strain K12) GN=srlD PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.600e-13
Identity = 60/256 (23.44%), Postives = 117/256 (45.70%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVS-PYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEP---------EDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +VA++ GG + +G       +  G +V + DI+ D   +V ++I           +   D T E+ +          +G++D++  +AG        I D    +F+R L +NLVG FL  +  +R+M   G +G II   S  G +G      Y+++K G +GL ++ A++L  +GI V+ +    ++ +P+ +  L      LG     ++   ++          +D+    L+  S ++   +G ++ V GG
Sbjct:    3 QVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGF-GADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAF--ISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.600e-13
Identity = 74/262 (28.24%), Postives = 113/262 (43.13%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVL-IADIKDDLG---------ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGR-GSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAI 847
            L G+ AL+TG  +GIG  T       GA V+ ++  + DL          E+VC D+                         A   A++  G +D++ NNA  V  ++P  L+  +  F+   ++NL      ++  AR M   G  G+I++ +S       A    Y S+K  L  L K  A+ELG   IRVN V+P VV T + +            +     G   E E++ +A L+L S  S   +G  L VDGGF +
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALQAAGAHVVAVSRTQADLDSLVSECPGVETVCVDLADW---------------------EATEQALSSVGPVDLLVNNAA-VALLQP-FLEVTKEAFDMSFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTSMGRTNWSDPHKAKVMLDRIPLGKFAEVENVVDAILFLLSHRSNMTTGSTLPVDGGFLV 243          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.314e-13
Identity = 64/253 (25.30%), Postives = 114/253 (45.06%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQY-GKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLAD--DGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L+G  AL+TGG+RGIG       +  GA V          + + + +              CD++   + E  + T    + GKL+I+ NNAG V  +     D    ++  I+SIN   A+  +  A   +K + RG+++  +S+ G         Y ++K  +  L +  A E  +  IRVN V P V++T + +  ++  +  + L  +        + EP+++A    +L    +  V+G  + VDGGF
Sbjct:    7 LEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQ---KELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIV--IYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLCFPAASYVTGQIIYVDGGF 254          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PHBB_RHIME (Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN=phbB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.314e-13
Identity = 63/246 (25.61%), Postives = 108/246 (43.90%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL-KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +VAL+TGG+RGIG          G KV      +D      +                 DV+  +   + +       G +DI+ NNAG   +   + +  +Q  +  ++  NL G F  T      M+  G G I++ +S+ G  G      Y+++K G LGL K  A E    GI VN + P  + T + +    K+ ++ +        G + EPE++A   ++L SD++  ++G  +  +GG
Sbjct:    3 RVALVTGGSRGIGAAICVALKAAGYKVAANYAGNDERAKAFEQ-------ESGIPVYKWDVSSYQACVDGIARVEADLGPVDILVNNAGITRDAMFHKMTPEQ--WGEVIGTNLTGVFNMTHPLWSGMRDRGFGRIVNISSINGQKGQMGQVNYSAAKAGDLGLTKALAQEGAAKGITVNAICPGYIGTEMVRAVPEKVLNERIIPQIP--VGRLGEPEEVARCVVFLASDDAGFITGSTISANGG 237          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PHBB_RALEH (Acetoacetyl-CoA reductase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 63/246 (25.61%), Postives = 111/246 (45.12%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLE-PEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            ++A +TGG  GIG    +  +K G +V+     +       K +               +V      + A +   ++ G++D++ NNAG   +V    +   +A+++ ++  NL   F  TK     M   G G I++ +SV G  G      Y+++K GL G     A E+   G+ VN VSP  ++T + K    +  D L  + + +    L  PE+IA    +L S+ES   +G +  ++GG
Sbjct:    4 RIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRRE--KWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMT--RADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVK---AIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGG 242          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
BPHB_PSEPU2.514e-1327.30Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
BPHB_BURXL2.514e-1328.33Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
SORD_KLEPN3.283e-1326.40Sorbitol-6-phosphate 2-dehydrogenase OS=Klebsiella... [more]
DHB13_RAT3.283e-1326.5817-beta hydroxysteroid dehydrogenase 13 OS=Rattus ... [more]
BPHB_PSES13.283e-1328.79Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
SRLD_ECOLI5.600e-1323.44Sorbitol-6-phosphate 2-dehydrogenase OS=Escherichi... [more]
DCXR_MESAU5.600e-1328.24L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
TRN2_HYONI7.314e-1325.30Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
PHBB_RHIME7.314e-1325.61Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN... [more]
PHBB_RALEH9.552e-1325.61Acetoacetyl-CoA reductase OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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