CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BEND_ACIAD (1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=benD PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 68/264 (25.76%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVS-------PYVV---STPLAKD----FLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +R + KV ++TG A+GIG   A   ++ G  +++AD + DL ++V  +I            V  D+      E  V+ A+ +YG++D++ NN G    +KP   +  + E  + +  +L  A    +     M    +G+I++ +S+     G     Y++SK G+  L  + A E  + GIRVN V+       P  +   + PL+K       ++ D  +   +    G++   ++   A  +L SDES  ++G  L V GG
Sbjct:    5 QRFEHKVVIVTGAAQGIGRGVALRIAQEGGCLILAD-RSDLIQAVLAEIKALGALAIA---VETDLETYAGAELVVSHAIAEYGRIDVLINNVGGAIWMKP-FQEFSEEEIIQEVHRSLFPALWCCRAVLPEMLKHQQGTIVNVSSIA--TRGIHRIPYSASKGGVNALTASLAFEHAQHGIRVNAVATGGTKAPPRKIPRNAQPLSKSEQVWMQQVVDQTIDRSFLGRYGSI---DEQVNAITFLASDESSYITGSVLPVGGG 258          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YXEK_CAEEL (Uncharacterized oxidoreductase F53C11.3 OS=Caenorhabditis elegans GN=F53C11.3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 73/258 (28.29%), Postives = 109/258 (42.25%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKL-DIMFNNAG-----TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRG-SIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL---KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L GKVAL+TGG  G+G+  A  F+  GA V IA  + D+ E    +I            +  DV     +  A +    + G   DI+ NNA        + + PN        +  I+ I L G    T    R      RG S++S  ++    G       A SK G+  + K+ A E  + G+R N ++P  + T  A   L   +L D G     S   G +  PE+IA  A ++ SD    ++G  +  DGG
Sbjct:   24 LNGKVALVTGGGTGLGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSSTGGVCEPFQM--DVKDPAKVAKAFDAVEKKLGHTPDILINNAAGNFIMATERLSPN-------AYGTIIDIVLKGTLHVTTELGRRCIQQKRGASVLSITTLYAQSGAPFVVPSAVSKAGVENMTKSLASEWAKHGLRFNAIAPGPIPTEGAFGRLFAGELKDSGDAMKASVPVGRLGHPEEIANLAAFMSSDFMSWMNGAIIDFDGG 272          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YD114_YEAST (Uncharacterized oxidoreductase YDL114W OS=Saccharomyces cerevisiae GN=YDL114W PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 59/201 (29.35%), Postives = 93/201 (46.27%), Query Frame = 2
Query:  110 ALITGGARGIGECTARLFSKHGAKVLIADIKD--DLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMK-------NTAVELGRFGIRVNCVSPYVVSTPLAKD 685
            ALITGG+ G+G   A+  S+   KV++ADI+      +    +I           Y  CD+T   +I+N        +G ++I+ NNAG     K   + N   E E+++ INL+GA+      A  M     G II+ ASV G +  A   +Y +SK  ++G  K       + + E  + GI+   V P  + T +  D
Sbjct:   41 ALITGGSSGLGFELAKELSRRINKVIVADIQSFPTFAQVEYNNIF----------YYQCDITSLDEIKNLKKAIERDHGNINIIINNAGVAHIKKLEHMTNK--EVEQLIDINLIGAYRIISTFAEDMIDNREGFIINIASVLGELTPARLTSYGASKGAMIGFHKCMSRHFRSLSTECNKTGIKTLLVCPGKIKTNMFID 229          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PHAB_PARDE (Acetoacetyl-CoA reductase OS=Paracoccus denitrificans GN=phaB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 61/239 (25.52%), Postives = 106/239 (44.35%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADI-KDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDF-LKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSG 814
            KVAL+TGG+RGIG   ++   + G  V       DD   +  ++            Y  C           +     + G + ++ NNAG   +   + +   Q  ++ ++  NL G F  T      M+    G I++ +S+ G  G A    Y+++K G LG  K  A E  R GI VN + P  + T + +    K+ ++G+  +      A  EPE+IA   ++L S+++  ++G
Sbjct:    3 KVALVTGGSRGIGAAISKALKEAGYTVAANYAGNDDAARAFTEETGIKTYKWSVADYDACAA--------GIKQVEEELGPIAVLVNNAGITRDAMFHKMTPQQ--WKEVIDTNLTGLFNMTHPVWSGMRDRKYGRIVNISSINGQKGQAGQANYSAAKAGDLGFTKALAQEGARAGITVNAICPGYIGTEMVRAIDEKVLNEGI--IPQIPVAAWAEPEEIARCVVFLASEDAGFITG 229          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DECR_RAT (2,4-dienoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Decr1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 66/257 (25.68%), Postives = 113/257 (43.97%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNA-----GTVDEVKPNILDNDQAEFERILSINLVG-AFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL----KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            QGKVA ITGG  G+G+      S  GA+ +IA    D+ ++  ++I            + CDV     + N V   +   G  D++ NNA        + + PN        ++ I  I L G A++  +   +++K     + ++  ++    G       +S+K G+  + K+ A E GR+G+R N + P  + T  A   L    K   D +  +     G V   E++A  A +L SD +  ++G  +  DGG
Sbjct:   58 QGKVAFITGGGTGLGKAMTTFLSSLGAQCVIASRNIDVLKATAEEITSKTGNKVYA--IRCDVRDPDMVHNTVLELIKVAGHPDVVINNAAGNFISPSERLSPN-------GWKTITDIVLNGTAYVTIEIGKQLIKAQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGRYGMRFNIIQPGPIKTKGAFSRLDPTGKFEKDMIERIPCGRLGTV---EELANLATFLCSDYASWINGAVIRFDGG 302          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 70/256 (27.34%), Postives = 112/256 (43.75%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGA--------VLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L  +VA ITGG  GIG   A +  +HG   +IA    +      K +            +  DV + + I  AV+  +  +G++DI+ NNA          L  +   F+ ++ I+ +G F  +K           GSI++ ++  G  G A      S+K     + ++ AVE G  G+RVN V+P  +S    + + +     LGG ++   GA             ++A A L+L S  S  V+G  LV DGG
Sbjct:   33 LSDQVAFITGGGSGIGFRIAEVLMRHGCDTVIASRNLEKISQAAKKLTSTTGRRCLP--IAMDVRQPETILAAVDETLKTFGRVDILINNAAGNFLCPATSLSFNA--FKTVMEIDTMGTFNTSKVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPSGVRVNTVAPGPISG--TEGYRR-----LGGSHAETAGAFHSIPLQRAGNKTEMAHAVLFLASRASSYVTGSVLVADGG 277          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BPHB_COMTE (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Comamonas testosteroni GN=bphB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 61/201 (30.35%), Postives = 91/201 (45.27%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVD---EVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPA---GRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            +L G+VALITGGA G+G      F   GA+V + D      +S  +              V  DV   +D + A    +  +GK+D +  NAG  D    +     D   A F+ I  +N+ G      HA +   PA    RGS++ T S  G         Y ++KH ++GL++  A EL    +RVN V+P  ++T L
Sbjct:    2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLD------KSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYI----HAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDL 191          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YDFG_SALTY (NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG OS=Salmonella typhimurium GN=ydfG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 63/237 (26.58%), Postives = 101/237 (42.62%), Query Frame = 2
Query:  107 VALITGGARGIGECTARLFSKHGAKVL--------IADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVV-STPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGS 790
            + L+TG   G GEC AR F ++G KV+        +  +KD+LGE+V                   DV     IE  + +   Q+  +D++ NNAG    ++P    + + ++E ++  N  G    T+     M    RG II+  S  G    A  + Y ++K  +     N   +L    +RV  + P +V  T  +    K  D+  G  Y N     L PEDI EA  ++ +
Sbjct:    2 IVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDELGENVLT--------------AQLDVRNRAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPAHKASVE-DWETMIDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSSVRFKGDDEKAGKTYENT--TALTPEDITEAVWWVAT 221          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YDFG_SALTI (NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG OS=Salmonella typhi GN=ydfG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 63/237 (26.58%), Postives = 101/237 (42.62%), Query Frame = 2
Query:  107 VALITGGARGIGECTARLFSKHGAKVL--------IADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVV-STPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGS 790
            + L+TG   G GEC AR F ++G KV+        +  +KD+LGE+V                   DV     IE  + +   Q+  +D++ NNAG    ++P    + + ++E ++  N  G    T+     M    RG II+  S  G    A  + Y ++K  +     N   +L    +RV  + P +V  T  +    K  D+  G  Y N     L PEDI EA  ++ +
Sbjct:    2 IVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDELGENVLT--------------AQLDVRNRAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPAHKASVE-DWETMIDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSSVRFKGDDEKAGKTYENT--TALTPEDITEAVWWVAT 221          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: XYLL_PSEPU (1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase OS=Pseudomonas putida GN=xylL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 66/263 (25.10%), Postives = 113/263 (42.97%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVV----------STPLAKD---FLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +R QGKVA+ITG A+GIG   A   +  G ++L+ D  +     +  ++            +  D+ +  + +  +  A+ ++G+LDI+ NN G     KP      + E E  +  +L         A   M   G G+I++ +SV     G     Y ++K G+  L    A E    GIRVN  +P             + P  ++   + ++ D  L        G++   ++  EA L+L SD +  ++G  L V GG
Sbjct:    3 KRFQGKVAVITGAAQGIGRRVAERMAAEGGRLLLVDRSE-----LIHELADELVGVAEVLTLTADLEQFAECQRVMAAALERFGRLDILINNVGGTIWAKP-FEHYQEREIEAEVRRSLFPTLWCCHAALAPMIEQGSGAIVNVSSVA--TRGIHRVPYGAAKGGVNALTACLAFETAERGIRVNATAPGGTEARHGGFRNSAEPSEQEKVWYQQIVDQSLDSSLMKRYGSI---DEQVEAILFLASDAASYITGITLPVAGG 254          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
BEND_ACIAD9.552e-1325.761,6-dihydroxycyclohexa-2,4-diene-1-carboxylate deh... [more]
YXEK_CAEEL1.248e-1228.29Uncharacterized oxidoreductase F53C11.3 OS=Caenorh... [more]
YD114_YEAST1.248e-1229.35Uncharacterized oxidoreductase YDL114W OS=Saccharo... [more]
PHAB_PARDE1.248e-1225.52Acetoacetyl-CoA reductase OS=Paracoccus denitrific... [more]
DECR_RAT1.248e-1225.682,4-dienoyl-CoA reductase, mitochondrial OS=Rattus... [more]
DECR2_DANRE1.248e-1227.34Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
BPHB_COMTE1.248e-1230.35Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
YDFG_SALTY1.629e-1226.58NADP-dependent L-serine/L-allo-threonine dehydroge... [more]
YDFG_SALTI1.629e-1226.58NADP-dependent L-serine/L-allo-threonine dehydroge... [more]
XYLL_PSEPU1.629e-1225.101,6-dihydroxycyclohexa-2,4-diene-1-carboxylate deh... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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