CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: KDSR_MOUSE (3-ketodihydrosphingosine reductase OS=Mus musculus GN=Kdsr PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 53/195 (27.18%), Postives = 91/195 (46.67%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXY-VHCDVTKE-KDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTP 673
            L G   ++TGG+ GIG+C A    K GA + +    +D      KDI             +  DV+++   +EN +  A  + G +D++ N AGT   +     + + + FE+++SIN +G+   ++     MK    G I+  +S  G +G     AY+SSK  + GL +   +E+  + + V    P    TP
Sbjct:   30 LPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGT--SMSGKFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTP 222          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: KDSR_BOVIN (3-ketodihydrosphingosine reductase OS=Bos taurus GN=KDSR PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKV-LIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKE-KDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTP 673
            L G   ++TGG+ GIG+C A    K GA + L+A  +D L ++  +              +  DV+++   +EN +  A  + G +D++ N AG    +     D + + FER++SIN +G+   ++     MK    G ++  +S  G +G     AY+SSK  L GL +   +E+  + + V    P    TP
Sbjct:   30 LPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGM--SLSGKFEDLEVSTFERLMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEALQMEVKPYNVYVTVAYPPDTDTP 222          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DCXR_HUMAN (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 73/260 (28.08%), Postives = 110/260 (42.31%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVL-IADIKDDLG---------ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L G+  L+TG  +GIG  T +     GA+V+ ++  + DL          E VC D+                         A   A+   G +D++ NNA  V  ++P  L+  +  F+R   +NL      ++  AR +   G  G+I++ +S C          Y S+K  L  L K  A+ELG   IRVN V+P VV T + +            +     G   E E +  A L+L SD S   +G  L V+GGF
Sbjct:    5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW---------------------EATERALGSVGPVDLLVNNAA-VALLQP-FLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YWC4_CAEEL (Uncharacterized oxidoreductase W01C9.4 OS=Caenorhabditis elegans GN=W01C9.4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 67/252 (26.59%), Postives = 116/252 (46.03%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKL-DIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAF-LGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL---KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +GK+ L+TGG  GIG+  A  F+   A V+IA  + +  E   +DI            +  D+     + +A +    ++GK+ +I+ NNA     +   +L ++   +  I+ I L G F + T+   R ++     SI S  +     G       A SK G+  + K+ A E  ++G+R N VSP  + T  A   L   ++ D      + N +G V  PE++A    ++ SD    ++G  + +DGG
Sbjct:   24 KGKLVLVTGGGTGIGKAIATTFAHLRATVVIAARRMEKLEQTARDITKITGGTCEPFQM--DIKDPGMVSDAFDKIDMKFGKVPEILVNNAAGNFIMATELLSSN--AYGTIIDIVLKGTFNVTTELGKRCIQNKTGASITSITAGYARAGAPFIVPSAVSKAGVETMTKSLATEWSKYGLRFNAVSPGPIPTKGAWGRLNSGEMGDIAEKMKFLNPEGRVGSPEEVANLVAFISSDHMSFLNGAIIDLDGG 271          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YCIK_ECOLI (Uncharacterized oxidoreductase yciK OS=Escherichia coli (strain K12) GN=yciK PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 59/240 (24.58%), Postives = 106/240 (44.17%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSG 814
            L  ++ L+TG + GIG   A  ++++GA V++    ++    V   I            +       ++ +         Y +LD + +NAG + +V P    N Q  ++ ++ +N+   F+ T+    ++  +  GS++ T+S  G  G A   AYA+SK    G+M+  A E  +  +RVNC++P    T +        D         LK     P DI    L+L  D+S+  +G
Sbjct:   10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQV-WQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLRVNCINPGGTRTAMRASAFPTEDP------QKLK----TPADIMPLYLWLMGDDSRRKTG 237          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 56/204 (27.45%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  113 LITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXY--------------VHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAA--THAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            +ITG  RG+G+  AR F   G +V++     +  +   K++                          + CDV K +D+E   N AV + G ++I  NNAGT    +P +L+  + +  +I+S NL+G+ L T+ A  VM     G  I      G  G +   T  Y S+K GL     +   E  +  + ++  SP +V T L
Sbjct:  165 VITGSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRP-LLEFTEEDITQIVSTNLIGSILCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQKTNVGLHTASPGMVLTEL 367          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DECR_MOUSE (2,4-dienoyl-CoA reductase, mitochondrial OS=Mus musculus GN=Decr1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 64/250 (25.60%), Postives = 110/250 (44.00%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNN-AGTVDEVKPNILDNDQAEFERILSINLVG-AFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            QGKVA ITGG  G+G+      S  GA+ +IA    D+ ++  ++I            + CDV     + N V   +   G  D++ NN AG        +  N    ++ I  I L G A++  +   +++K     + ++  ++    G       +S+K G+  + K+ A E GR+G+R N + P  + T  A   L         M   +  G +   E++A  A +L SD +  ++G  +  DGG
Sbjct:   58 QGKVAFITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHA--IRCDVRDPDMVHNTVLELIKVAGHPDVVINNAAGNFISPSERLTPNG---WKTITDIVLNGTAYVTLEIGKQLIKAQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGRYGMRFNIIQPGPIKTKGAFSRLDPTGRFEKEMIDRIPCGRLGTMEELANLATFLCSDYASWINGAVIRFDGG 302          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YJGI_ECOLI (Uncharacterized oxidoreductase yjgI OS=Escherichia coli (strain K12) GN=yjgI PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 74/253 (29.25%), Postives = 108/253 (42.69%), Query Frame = 2
Query:  101 GKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGI-IGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVL-----EPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            GK  LI GG+RGIG    R F   GA V           +  KD             V  D + ++D   AV   V + G LDI+  NAG    V    L+ +  + +R+  IN+   +  +  AAR M   GR  II + +   + + G A  AYA+SK  L G+ +  A + G  GI +N V P  + T         A+   G M   L   +      +PE++A    +L   E+  V+G    +DG F
Sbjct:    6 GKTVLILGGSRGIGAAIVRRFVTDGANVRFT-------YAGSKDAAKRLAQETGATAVFTD-SADRD---AVIDVVRKSGALDILVVNAGI--GVFGEALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMA--AYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTD--------ANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAF 235          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: MTDH_AGABI (NADP-dependent mannitol dehydrogenase OS=Agaricus bisporus GN=mtdH PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 72/258 (27.91%), Postives = 113/258 (43.80%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIA--DIKD--DLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARV-MKPAGRGSIISTASVCGII------GGAATHA-YASSKHGLLGLMKNTAVELGRFGIRVNCVSP-YVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            K  ++TGG RGIG    R  +  GA V +     KD  ++ E V K+               CDV+    +   +       G +  +  NAG V  VKP   +    +F+ +  +N+ G F   +  A++ ++   +GSI+ T+S+   I       G+ T   Y SSK     L+K  A E    GIRVN +SP YV +   A    K+ D     +  N      +PE++   A+ L SD +  ++G    +DGG
Sbjct:   12 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAKDAVEVTEKVGKEFGVKTKAY------QCDVSNTDIVTKTIQQIDADLGAISGLIANAG-VSVVKP-ATELTHEDFKFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLN---RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 258          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DCXR_MOUSE (L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 71/260 (27.31%), Postives = 112/260 (43.08%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVL-IADIKDDLG---------ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L G+ AL+TG  +GIG  T       GA+V+ ++  ++DL          E VC D+                         A   A++  G +D++ NNA  V  ++P  L+  +   +   ++NL      ++  A+ M   G  G+I++ +S            Y S+K  L  L K  A+ELG   IRVN V+P VV TP+ +            +     G   E E++ +  L+L S+ S   +G  L VDGGF
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPGVEPVCVDLADW---------------------EATEQALSNVGPVDLLVNNAA-VALLQP-FLEVTKEACDTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGSTLPVDGGF 241          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
KDSR_MOUSE1.629e-1227.183-ketodihydrosphingosine reductase OS=Mus musculus... [more]
KDSR_BOVIN1.629e-1227.693-ketodihydrosphingosine reductase OS=Bos taurus G... [more]
DCXR_HUMAN1.629e-1228.08L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
YWC4_CAEEL2.128e-1226.59Uncharacterized oxidoreductase W01C9.4 OS=Caenorha... [more]
YCIK_ECOLI2.779e-1224.58Uncharacterized oxidoreductase yciK OS=Escherichia... [more]
NYC1_ARATH2.779e-1227.45Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
DECR_MOUSE2.779e-1225.602,4-dienoyl-CoA reductase, mitochondrial OS=Mus mu... [more]
YJGI_ECOLI3.630e-1229.25Uncharacterized oxidoreductase yjgI OS=Escherichia... [more]
MTDH_AGABI3.630e-1227.91NADP-dependent mannitol dehydrogenase OS=Agaricus ... [more]
DCXR_MOUSE3.630e-1227.31L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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