CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: KDSR_HUMAN (3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 53/195 (27.18%), Postives = 93/195 (47.69%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKV-LIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKE-KDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTP 673
            L G   ++TGG+ GIG+C A    K GA + L+A  +D L ++  +              +  DV+++   +EN +  A  + G +D++ N AG    V     D + + FER++SIN +G+   ++     MK    G I+  +S  G +G     AY++SK  + GL +   +E+  + + +    P    TP
Sbjct:   30 LPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMA--VSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTP 222          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECO5E (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 62/199 (31.16%), Postives = 87/199 (43.72%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  AG GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPALI-AGEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECO57 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O157:H7 GN=hcaB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 62/199 (31.16%), Postives = 87/199 (43.72%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  AG GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPALI-AGEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DER_CHICK (D-erythrulose reductase OS=Gallus gallus GN=DER PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 74/263 (28.14%), Postives = 114/263 (43.35%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKV-----LIADIKDDLG-----ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNL--KGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAI 847
            +G+ AL+TG  +GIG   A    K GA+V       AD++  +      E +C D+                        +A   AV   G  +++ NNA  V  ++P  L   +   ER   +N       ++  AR M   G  G+I++ +S            Y S+K  L  L K  A+ELG   IRVN V+P VV T + +  +  +D        N    G   E +D+  + L+L SD+S   +G +L+VDGGF +
Sbjct:    8 RGRRALVTGAGKGIGRAVAVALCKAGARVTALSRTAADLESLVRECPGIEPLCLDLADW---------------------DATEAAVGAAGPFELLVNNA-AVAMLQP-FLQVTREAVERSFDVNFRAVLHVSQIVARQMIAQGLPGAIVNVSSQASQRALRDHAVYCSTKSALDMLSKVMAMELGPHKIRVNTVNPTVVMTDMGR--INWSDPQKSAAMINRIPLGKFAEVDDVVNSILFLLSDKSAMTTGSSLMVDGGFLV 245          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: RD10B_DANRE (Retinol dehydrogenase 10-B OS=Danio rerio GN=rdh10b PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 54/214 (25.23%), Postives = 92/214 (42.99%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCK----------------DIXXXXXXXXXXXYVH-CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVEL---GRFGIRVNCVSPYVVST 670
            + ++G+V +ITG   G+G   A  F++  A +++ DI     E   +                D            Y + CDV+K + +        ++ G +D++ NNAG V     ++LD      ER + +N    F  TK     M     G I++ AS  G+   A    Y +SK G +G  ++ + EL    + GI++  V P++V T
Sbjct:   32 KSVEGQVCVITGAGSGLGRLFALEFARRRATLVLWDINRQSNEETAEMAREIYRQLKPSTGSSDSVQELPLLQPKVYTYMCDVSKRESVYLTAEKVRSEVGDIDLLINNAGVVS--GRHLLDCPDELIERTMMVNCHAHFWTTKAFLPKMLELNHGHIVTVASSLGLFTTAGVEDYCASKFGAIGFHESLSHELKAADKDGIKMTLVCPFLVDT 243          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLU (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 62/199 (31.16%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AVN  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVNQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DRS7B_XENLA (Dehydrogenase/reductase SDR family member 7B OS=Xenopus laevis GN=dhrs7b PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 60/232 (25.86%), Postives = 101/232 (43.53%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQY----GKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAAL 778
            LQ  V +ITG   G+G+  A++F   G+ +++    ++  + + +++             H  +    D+E AVNTA  +     G++DI+ NNAG     +  ILD   +    ++  N  G    TK     M    RG ++  +SV G I      AY++SKH           E+  + I V  V+P  + T L+ + +     G G M  N       PE++A+  L
Sbjct:   34 LQAAVVVITGATSGLGKECAKVFYAAGSHLVLCGRDEERLKDLVQELNNMRLKSTQLHKPHMVIFDLSDVE-AVNTAAKEILHLAGRVDILINNAGI--SYRGTILDTKVSVDRMVMDTNYFGPVALTKALLPSMIKNRRGHVVVISSVQGKISIPFRSAYSASKHATQAFFDCLRAEMSPYDIDVTVVNPGYIKTNLSLNAVTGDGSGYGVMDKNTADG-RTPEEVAQTVL 261          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: CMTB_PSEPU (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida GN=cmtB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 71/252 (28.17%), Postives = 119/252 (47.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVH-CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATH-AYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNL--KGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L+G+VA++TGGA GIG          GA+V  +DI +     +C+ +            VH  D+++E+  +     AV ++G + I+ N AG    ++P  L++     +  +  NL  A   ++     M     G II+  +   +  G   H AY ++K G+ GL    A E  R G+ VN V+P  V+T +    +K A+  L   + ++   G V E E++A    YL   E+  V+G  + V+GG
Sbjct:   11 LEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLLCERLAAKHADAIA---VHAADLSEEQGAQGLHRAAVERFGSVQILVNCAGG-GVIRP-FLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRIINIGA-DSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVR-IKNANPELAQRFLDVIPMGRVGEIEEVASMVGYLAQPEAAFVTGQVISVNGG 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: CMTB_PSEP1 (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cmtB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 71/252 (28.17%), Postives = 119/252 (47.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVH-CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATH-AYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNL--KGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L+G+VA++TGGA GIG          GA+V  +DI +     +C+ +            VH  D+++E+  +     AV ++G + I+ N AG    ++P  L++     +  +  NL  A   ++     M     G II+  +   +  G   H AY ++K G+ GL    A E  R G+ VN V+P  V+T +    +K A+  L   + ++   G V E E++A    YL   E+  V+G  + V+GG
Sbjct:   11 LEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLLCERLAAKHADAIA---VHAADLSEEQGAQGLHRAAVERFGSVQILVNCAGG-GVIRP-FLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRIINIGA-DSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVR-IKNANPELAQRFLDVIPMGRVGEIEEVASMVGYLAQPEAAFVTGQVISVNGG 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: MFEA_DICDI (Peroxisomal multifunctional enzyme A OS=Dictyostelium discoideum GN=mfeA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 53/197 (26.90%), Postives = 88/197 (44.67%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADI---------KDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVS 667
            KV ++TG   GIG+  A  F+K GAKV++ D+              + V ++I               +    +D E  V TA+  +G +DI+ NNAG + +V    + +   +++ +  ++  GA+  ++ A   M+    G II T+S  G+ G      Y S K  L+GL    A E     I  N ++P   S
Sbjct:    8 KVVIVTGAGGGIGKVYALEFAKRGAKVVVNDLGGSHTGQGSSSKAADKVVEEIKAAGGTAV------ANYDSVEDGEKIVQTAMDSFGGVDILINNAGILRDVSFGKMTD--GDWDLVYRVHAKGAYKLSRAAWNHMREKNFGRIIMTSSAAGLYGNFGQANYGSMKMALVGLSNTLAQEGKSKNIHCNTIAPIAAS 196          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
KDSR_HUMAN4.741e-1227.183-ketodihydrosphingosine reductase OS=Homo sapiens... [more]
HCAB_ECO5E4.741e-1231.163-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO574.741e-1231.163-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
DER_CHICK4.741e-1228.14D-erythrulose reductase OS=Gallus gallus GN=DER PE... [more]
RD10B_DANRE6.191e-1225.23Retinol dehydrogenase 10-B OS=Danio rerio GN=rdh10... [more]
HCAB_ECOLU6.191e-1231.163-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
DRS7B_XENLA6.191e-1225.86Dehydrogenase/reductase SDR family member 7B OS=Xe... [more]
CMTB_PSEPU6.191e-1228.172,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
CMTB_PSEP16.191e-1228.172,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
MFEA_DICDI8.086e-1226.90Peroxisomal multifunctional enzyme A OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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