CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HETN_ANASP (Ketoacyl reductase hetN OS=Anabaena sp. (strain PCC 7120) GN=hetN PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 56/198 (28.28%), Postives = 83/198 (41.92%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSP-YVVSTPLAKD 685
            L GK  L+TG +RG+G   AR  +K  A V+            C  +           +   DV     +   V  A    G +D++ NNAG   E+     +   AE + I + NL+ A   T+     M   G G I++ AS+ G  G A    Y++SK GL+        EL   G+ ++ V P YV  T +  D
Sbjct:    4 LTGKTVLLTGASRGLGVYIARALAKEQATVVCVSRSQSGLAQTCNAVKAAGGKAIAIPF---DVRNTSQLSALVQQAQDIVGPIDVLINNAGI--EINGTFANYSLAEIQSIFNTNLLAAMELTRLLLPSMMERGSGRIVNIASLAGKKGVAFNSVYSASKAGLIMWTDAMRQELVGTGVNISVVCPGYVSQTGMTVD 196          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DRS7B_DANRE (Dehydrogenase/reductase SDR family member 7B OS=Danio rerio GN=dhrs7b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 59/232 (25.43%), Postives = 102/232 (43.97%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQ----YGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAAL 778
            +Q KV +ITG + G+G+  AR+F   GA++++        + V +++           Y  C VT +    + V +A  +    +G +D++ N AG     + NILD   +    ++  N  G    T+     M   G G I+  +SV G I      AYA+SKH +         E+   G+ V+ +SP  V T ++ + +   D    G+         +P D+A+  L
Sbjct:   35 IQDKVVVITGASSGLGKECARVFHAAGARLILCGRDQRRLQEVVEELGNKTYGKTKT-YTPCTVTFDLSNTSVVCSAAAEILKRHGHVDVLINIAGV--SYRGNILDTHVSVQREVMETNYFGPVALTQAILPSMVDRGSGHIVVISSVQGKISIPYRSAYAASKHAMQAYYDCLRAEVDSLGLHVSVLSPGYVRTNMSINAV-TGDGSKYGVMDRTTATGADPVDVAKDIL 262          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DCXR_CAVPO (L-xylulose reductase OS=Cavia porcellus GN=DCXR PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 71/260 (27.31%), Postives = 110/260 (42.31%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVL-IADIKDDLG---------ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L G+ AL+TG  +GIG  T       GA+V+ ++  ++DL          E VC D+                         A   A++  G  D++ NNA  V  ++P  L+  +       ++NL      ++  A+ M   G  G+I++ +S            Y S+K  L  L K  A+ELG   IRVN V+P VV TP+ +            +     G   E E++ +  L+L S+ S   +G  L VDGGF
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPGVEPVCVDLADW---------------------EATEQALSNVGPADLLVNNAA-VALLQP-FLEVTKEACVTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALYMLTKMMALELGPHKIRVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGSTLPVDGGF 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 71/260 (27.31%), Postives = 111/260 (42.69%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVL-IADIKDDLG---------ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L G+ AL+TG  +GIG  T       GA+V+ ++  ++DL          E VC D+                         A   A++  G +D++ NNA  V  ++P  L+  +   +   ++N       ++  AR M   G  G+I++ +S            Y S+K  L  L K  A+ELG   IRVN V+P VV TP+ +            +     G   E E++ +  L+L S+ S   +G  L VDGGF
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALQAAGAQVVAVSRTREDLDSLVRECPGVEPVCVDLADW---------------------EATEQALSNVGPVDLLVNNAA-VATLQP-FLEVTKEACDTSFNVNFRAVVQVSQIVARGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPMGRANWSDPHKAKVMLDRIPLGKFAEVENVVDTILFLLSNRSSMTTGSALPVDGGF 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YHXD_BACSU (Uncharacterized oxidoreductase yhxD OS=Bacillus subtilis GN=yhxD PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 68/254 (26.77%), Postives = 117/254 (46.06%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESV-CKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL----AKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +L G+ AL+TGG  GIG   A  +++ GA V I  + ++  ++   K++            +  D++ E   ++ V  +  + G LD++   AG    V+ NI D    +  +   +N+   +   K AA    P G  SII+T SV G         YA++K+ ++G       +L   GIRVN V+P  + TPL     +    +   G G   + L  A  +P ++A+  ++L S+ S  V+     + GG
Sbjct:   48 KLTGRKALVTGGDSGIGRAAAIAYAREGADVAINYLPEEQPDAEEVKELIEAEGRKAVL--IPGDLSDESFCQDLVKQSHHELGGLDVLALVAGKQQAVE-NIEDLPTEQIYKTFEVNVFSLYWVVK-AALPYLPEG-ASIITTTSVEGYNPSPMLLDYAATKNAIIGFTVGLGKQLASKGIRVNSVAPGPIWTPLQISGGQPTENIPKFGQGTPPAPLNRAG-QPVELADVYVFLASENSSYVTSQVYGITGG 295          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: S16C6_MOUSE (Short chain dehydrogenase/reductase family 16C member 6 OS=Mus musculus GN=Sdr16c6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 46/195 (23.59%), Postives = 83/195 (42.56%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELG---RFGIRVNCVSPYVVST 670
            + G++ LITG   G+G   A  F+ HGA +++ DI  +     C+ +              CD +   ++    +    + G + I+ NNAG V     + L+      E+   +N +  F   K     M  A  G ++  +S+ G++G      Y+SSK    G  ++  +EL    +  ++   V PY + T
Sbjct:   34 VSGEIVLITGAGSGLGRLLAIHFASHGATLVLWDINQEGNMETCRLVKQKGDVKVFA--YKCDCSSRIEVYRVADQVKEEVGDVTILINNAGVV--TGKSFLNTPDHLVEKSFLVNAISHFWTCKAFLPAMVKANHGHLVCISSIAGLVGINGLSDYSSSKFAAFGFAESLFLELTMIMKTKVKSTIVCPYFIKT 224          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 63/254 (24.80%), Postives = 107/254 (42.13%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGS----IISTASVCGIIG-GAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L G++AL+TGG+RGIG+  A+   + GA+V I   +D      C D             +  D++ E               +LDI+ NNAGT       +     + +E+++ +N+   F   +    +++ +        +I+  SV GI   G   +AY  SK  L  L +  A EL    I VN ++P    + + +              S   G    PE++A  A+ L       ++G+ + +DGGF
Sbjct:    7 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFIC-ARD---AEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGT--SWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 254          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_SHISS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella sonnei (strain Ss046) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAARYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_SHIFL (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella flexneri GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTTSKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_SHIF8 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTTSKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
HETN_ANASP8.086e-1228.28Ketoacyl reductase hetN OS=Anabaena sp. (strain PC... [more]
DRS7B_DANRE8.086e-1225.43Dehydrogenase/reductase SDR family member 7B OS=Da... [more]
DCXR_CAVPO8.086e-1227.31L-xylulose reductase OS=Cavia porcellus GN=DCXR PE... [more]
DCXR_RAT1.379e-1127.31L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
YHXD_BACSU2.353e-1126.77Uncharacterized oxidoreductase yhxD OS=Bacillus su... [more]
S16C6_MOUSE2.353e-1123.59Short chain dehydrogenase/reductase family 16C mem... [more]
RHLG_PSEAE2.353e-1124.80Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
HCAB_SHISS2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_SHIFL2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_SHIF82.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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