CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_SHIBS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOSE (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain SE11) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLI (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12) GN=hcaB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLC (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOHS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECODH (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOBW (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECO55 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECO24 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FIXR_BRAJA (Protein fixR OS=Bradyrhizobium japonicum GN=fixR PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 65/257 (25.29%), Postives = 115/257 (44.75%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQY--GKLDIMFNNAGTVDEV----KPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGI-IGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            R + KV L+TG +RGIG  TA+LFS+ G +++    +   GE                 +   D+   + +  A+     +     L  + NNAG   +     +   L      + R+  +NLV   L  +     ++ A  GSI++  S+ G  +   A  AYA+SK  L  L +  A +    GIRVN ++P  + T +      L+ D    + +++    V  P+++A+   +L SD +  V+G  + ++GG
Sbjct:   33 RGEPKVMLLTGASRGIGHATAKLFSEAGWRIISCARQPFDGE-------RCPWEAGNDDHFQVDLGDHRMLPRAITEVKKRLAGAPLHALVNNAGVSPKTPTGDRMTSLTTSTDTWMRVFHLNLVAPILLAQGLFDELR-AASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDM------LSPDAEARVVASIPLRRVGTPDEVAKVIFFLCSDAASYVTGAEVPINGG 275          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
HCAB_SHIBS2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOSE2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLI2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLC2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOHS2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECODH2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOBW2.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO552.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO242.353e-1130.653-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
FIXR_BRAJA2.353e-1125.29Protein fixR OS=Bradyrhizobium japonicum GN=fixR P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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