CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: ENTA_ECOLI (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS=Escherichia coli (strain K12) GN=entA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 64/255 (25.10%), Postives = 109/255 (42.75%), Query Frame = 2
Query:  101 GKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDG----LGGMYSNLK-----GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            GK   +TG  +GIG  TA  F + GAKV   D      ++  ++                DV     +       + +  +LD + N AG +     + L  +  ++++  ++N+ GAF   +      +    G+I++ AS           AY +SK  L  L  +  +EL   G+R N VSP    T + +  L ++DD     + G     K     G +  P++IA   L+L SD +  ++  ++VVDGG
Sbjct:    5 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFD------QAFTQEQYPFATEVM-------DVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKE--DWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRT-LWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGG 243          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BPHB_PSEPS (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas pseudoalcaligenes GN=bphB PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 58/202 (28.71%), Postives = 93/202 (46.04%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLI--------ADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVD------EVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSP 655
            +L+G+  LITGGA G+G      F    AKV +        A+++ DLG++V   +               DV   +D + A +  V ++GK+D +  NAG  D      ++    LD   A F+ +  IN+ G     K    ++  A RG++I T S  G         Y ++K  ++GL++  A EL  + +RVN V P
Sbjct:    2 KLKGEAVLITGGASGLGRALVDRFVAE-AKVAVLDKSAERLAELETDLGDNVLGIVG--------------DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLD---AAFDEVFHINVKGYIHAVKALPALV--ASRGNVIFTISNAGFYPNGGGPLYTAAKQAIVGLVRELAFELAPY-VRVNGVGP 182          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DRS7B_XENTR (Dehydrogenase/reductase SDR family member 7B OS=Xenopus tropicalis GN=dhrs7b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 59/232 (25.43%), Postives = 101/232 (43.53%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQY----GKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAAL 778
            LQ  V +ITG   G+G   A++F   G ++++    ++  +++ +++             H  +    D+E AVN+A  +     G++DI+ NNAG     +  ILD   +    ++  N  G    TK     M    RG I+  +SV G I      AY++SKH           E+  + I V  V+P  + T L+ + +   D    G+  N       PE++A+  L
Sbjct:   34 LQDAVVVITGATSGLGRECAKVFYAAGTRLVLCGRSEEGLKNLVQELSQMRIKSAQLHKPHMVIFDLSDVE-AVNSAANEILHLTGRVDILINNAGI--SYRGTILDTKVSVDRMVMDTNYFGPVALTKALIPSMIKNRRGHIVVISSVQGKISIPFRSAYSASKHATQAFFDCLRAEMSPYEIDVTVVNPGYIKTNLSLNAV-TGDGSNYGVMDNNTAEGRTPEEVAQTVL 261          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 65/251 (25.90%), Postives = 109/251 (43.43%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGM---YSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            LQ KVA ITGG  GIG   A +F +HG   +I         +  K +            +  DV    ++  AV+ A+ ++GK++I+ N A        + L  +   F+ ++ I+ +G F  +    +       G I++  +   + G        ++K  +  + ++ AVE G   IRVN ++P  +S    +   +L           +SN    +    +IA + LYL S  +  VSG  LVVDGG
Sbjct:   26 LQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRSLQKVTTAAKKLVAATGKRCLP--LSMDVRVPPEVMTAVDQALQEFGKINILINCAAGNFLCPASALSFN--AFKTVVDIDTIGTFNVSSVLYKKFFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQNIRVNSLAPGAISG--TEGLRRLRGSNASSKLKHFSNPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGG 270          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECOSM (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 60/199 (30.15%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + A++  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  A  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRALDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-IASEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCAB_ECO8A (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=hcaB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 60/199 (30.15%), Postives = 86/199 (43.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-----FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            L  +   ITGG  G+G      F + GA+V   ++      S  K              V  +VT   D + AV+  +T+ GKLD    NAG  D      L N  AE     F  + ++N++G  LG K  A  +  +  GS+I T S      G     Y +SKH   GL++  A EL    +RVN V P  +++ L
Sbjct:    4 LHNESIFITGGGSGLGLALVERFIEEGAQVATLEL------SAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNAS--LVNTPAETLETGFHELFNVNVLGYLLGAKACAPAL-ISSEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 65/251 (25.90%), Postives = 106/251 (42.23%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLE---PEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            LQ KVA ITGG  GIG   A +F +HG   +I            K +            +  DV     +  AV+ A+ ++GK+DI+ N A        + L  +   F+ ++ I+ +G F  ++           G I++  +   + G        ++K  +  + ++ AVE G   IRVN ++P  +S    +   +L        +  L   +       +IA + LYL S  +  VSG  LVVDGG
Sbjct:   26 LQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVSRSLPRVSEAAKKLVAATGKRCLP--LSMDVRVPPAVMAAVDQALKEFGKIDILINCAAGNFLCPASALSFN--AFKTVVDIDTLGTFNVSRVLYEKFFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQNIRVNSLAPGAISG--TEGLRRLGGPKASSKFKYLSSPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGG 270          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: VIBA_VIBCH (Vibriobactin-specific 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS=Vibrio cholerae GN=vibA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 65/250 (26.00%), Postives = 103/250 (41.20%), Query Frame = 2
Query:  113 LITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLK--------LADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L+ G ARGIG        + GA+V+ AD +  L     + +            +  D+ + + +   VN    Q    D +   AG +     + +  +Q     I ++N  G     +  A  MK   +GS++   S        +  AY +SK  L  L+K   +EL  +GIR N VSP    T + +            +A D            + EP DIA+A L+L SD +  ++ H+L VDGG
Sbjct:   12 LLVGSARGIGFSVLEHLLQAGAQVMAADCEWQLLLEQSESLLGRYPDQLTLKKL--DLAEPEAVREQVNQWAEQVAGFDHLVCCAGILHVAPLHEMPMEQVS--SIFTVNAFGVLACMQGVASSMKARQQGSMVIIGSNAANTPRMSIGAYGASKAALHMLVKCIGMELAPYGIRCNLVSPGSTRTAMQQQLWTEQYGEAQVIAGDAAQFRLGIPLNKIAEPADIAQAVLFLLSDNAGHITLHDLRVDGG 257          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YVX3_CAEEL (Uncharacterized oxidoreductase T05C12.3 OS=Caenorhabditis elegans GN=T05C12.3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 68/260 (26.15%), Postives = 112/260 (43.08%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGK-LDIMFNNAG-----TVDEVKPNILDNDQAEFERILSINLVGAF-LGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-----GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L+GKVAL+TGG  GIG+  A  F+  GA V IA  + +  E   ++I               D+     + +  +    ++GK  DI+ NNA        + + PN           I+ I L G   + T+   R ++     S+ S  +     G       A SK G+  + K+ A E  ++G+R N VSP  + T  A  + +L    +G +   +K     G    PE++A    ++ SD    ++G  + +DGG
Sbjct:   23 LKGKVALVTGGGTGIGKAIATTFAHLGASVAIAARRMEKLEQTAEEIMKTTGGICEP--FRMDIKDPGMVSDTFDKIDKKFGKHPDILVNNAAGNFIMATERLSPN-------AHGTIIDIVLKGTMNVTTELGKRCIQSKTGASVTSITAAYARSGAPFIVPSAVSKAGVEIMTKSLATEWSKYGLRFNAVSPGPIPTKGA--WGRLFSGEMGDVAEKMKELNPEGRSGTPEEVANLVAFISSDHMSFMNGVIIDLDGG 271          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHRS7_MOUSE (Dehydrogenase/reductase SDR family member 7 OS=Mus musculus GN=Dhrs7 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 54/199 (27.14%), Postives = 88/199 (44.22%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAK-VLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRF-GIRVNCVSPYVVSTPLAKD 685
            L   V  +TG + GIGE  A   SK G   VL A    +L     + +            +  D+T     E A    + ++GK+DI+ NN G     +  +L+ +   F+ ++++N +G    TK     M    +G I++  S+ GI   + +  Y +SKH L G       ELG++ GI    V P  V + + K+
Sbjct:   48 LTDMVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPLDLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQ--RSLVLETNLDVFKELINLNYIGTVSLTKCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGITFCNVYPGPVQSDIVKN 244          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ENTA_ECOLI2.353e-1125.102,3-dihydro-2,3-dihydroxybenzoate dehydrogenase OS... [more]
BPHB_PSEPS2.353e-1128.71Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
DRS7B_XENTR3.073e-1125.43Dehydrogenase/reductase SDR family member 7B OS=Xe... [more]
DECR2_MOUSE4.013e-1125.90Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
HCAB_ECOSM5.241e-1130.153-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO8A5.241e-1130.153-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
DECR2_RAT5.241e-1125.90Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
VIBA_VIBCH6.845e-1126.00Vibriobactin-specific 2,3-dihydro-2,3-dihydroxyben... [more]
YVX3_CAEEL8.940e-1126.15Uncharacterized oxidoreductase T05C12.3 OS=Caenorh... [more]
DHRS7_MOUSE8.940e-1127.14Dehydrogenase/reductase SDR family member 7 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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