CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.330e-22
Identity = 78/257 (30.35%), Postives = 126/257 (49.03%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLA---------KDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L  KVAL+T    GIG   AR  ++ GA V+++  K    ++V + +            + C V K +D E  + TA+ ++  +DI+ +NA  V+    N++D  +  ++++LSIN+    +  K     M+  G GS++   SV G     +   Y  SK  LLGL KN A EL    IRVNC++P ++ T  +         +DF+K A      M     G   +PED A    +L S+++  ++G  +VV GG
Sbjct:   12 LSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQ---QNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRGIDILVSNAA-VNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEKAREDFIKEA------MQIRRLG---KPEDCAGIVSFLCSEDASYINGETVVVGGG 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB8_CANFA (Estradiol 17-beta-dehydrogenase 8 OS=Canis familiaris GN=HSD17B8 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.330e-22
Identity = 78/256 (30.47%), Postives = 128/256 (50.00%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKL-----DIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAG-RGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            RL+  +AL+TG   GIG   +   +K GA V   D+           +             H     +     AV   + Q          ++ + AG T DE    +L   + +++R++++NL G FL T+ AA+ +  +G RGSII+ +S+ G +G      YA+SK G++GL +  A ELGR GIR N V P  ++TP+ +   +   D + GM     G + +PED+A+A  +L S++S  ++G ++ V GG
Sbjct:    6 RLRSALALVTGAGSGIGRAVSVRLAKEGATVAACDLDRAAACETVWLLGGQGSEKVAPGGAHTAFQADVSEAGAVRRLLEQVQACFSRPPSVVVSCAGLTRDEF---LLRMSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKVPQKVLDKVIGMIP--MGHLGDPEDVADAVTFLASEDSGYITGASVEVTGG 256          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.737e-22
Identity = 87/281 (30.96%), Postives = 146/281 (51.96%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDD-------LG-----ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG--TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKP---AGR--GSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKD--FLKLADDGLGG-------MYSNLKGAV----LEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            R++G+VALITG ARG G   A   ++ GA V++ D+ +D       LG     +   KD+            +H DV   + +   V+ AV+  G+LDI+  NAG  +V  +  +I DN    + +++ INL G +    H A+V  P   AG   GSI+ T+S  G+ G A    Y+++KHG++GLM++ A+EL    +RVN + P  V+TP+ ++    ++    L         + S    A+    +E  D++ A L+L S++++ ++G  + VD G
Sbjct:    3 RVEGQVALITGAARGQGRSHAIKLAEEGADVILVDVPNDVVDIGYPLGTADELDQTAKDVENLGRKAIV---IHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIASVPFLSHDIPDNT---WRQMIDINLTGVW----HTAKVAVPHILAGERGGSIVLTSSAAGLKGYAQISHYSAAKHGVVGLMRSLALELAPHRVRVNSLHPTQVNTPMIQNEGTYRIFSPDLENPTREDFEIASTTTNALPIPWVESVDVSNALLFLVSEDARYITGAAIPVDAG 273          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCD2_BOVIN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taurus GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.737e-22
Identity = 70/206 (33.98%), Postives = 107/206 (51.94%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQA----EFERILSINLVGAFLGTKHAARVM------KPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL 676
            R ++G VALITGGA G+G  TA      GA  ++ D+ +  GE+  K +           +   DVT EKD++ A+  A  ++G++D+  N AG     K   L   QA    +F+R++++NL+G F   +  A  M      +   RG II+TASV    G     AY++SK G++G+    A +L   GIRV  ++P +  TPL
Sbjct:    6 RSVKGLVALITGGASGLGLATAERLVGQGATAVLLDLPNSDGETQAKKLGKSCA------FAPADVTSEKDVQAALTLAREKFGRVDVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPMGIRVMTIAPGLFGTPL 205          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_RICFE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia felis GN=fabG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 76/254 (29.92%), Postives = 128/254 (50.39%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            L GK +LITG + GIG   ARL  K G+ V+I+   ++  +S+   +              C++  +++  N ++ A     KLDI+  NAG T D +   + D D   F++++ INL   F+  + A + M     G II+ +S+ GI G      Y +SK GL+G+ K+ + E+   GI VN V+P  + + +     KL +     +   +  G    PED+A A  +L SD++  ++G  + V+GG  +V
Sbjct:    4 LTGKTSLITGASGGIGGAIARLLHKLGSHVIISGSNEEKLKSLGNVLKDNYTIEI------CNLANKEECSNLISKAP----KLDILVCNAGITSDTLAIRMKDED---FDKVIDINLKANFILNREAIKKMMQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD---KLNEKQREAIVQKIPLGTYGMPEDVANAVAFLASDQASYITGQTIHVNGGMLMV 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_HAEIN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Haemophilus influenzae GN=fabG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 78/250 (31.20%), Postives = 124/250 (49.60%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNL-KGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +QGK+AL+TG  RGIG   A   S  GA V+     +   E++   +            +  +VT ++ IE  +      +G +DI+ NNAG T D +   + D    E+  I+  NL   +  +K   R M     G II+  SV G  G      Y ++K G++G  K+ A E+   GI VN V+P  ++T + +    L D+   G+ SN+  G + E +DIA+A  +L SD++  ++G  L V+GG
Sbjct:    1 MQGKIALVTGSTRGIGRAIAEELSSKGAFVIGTATSEKGAEAISAYLGDKGKG------LVLNVTDKESIETLLEQIKNDFGDIDILVNNAGITRDNLLMRMKDE---EWFDIMQTNLTSVYHLSKAMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVVAPGFIATDMTE---VLTDEQKAGILSNVPAGRLGEAKDIAKAVAFLASDDAGYITGTTLHVNGG 238          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 78/249 (31.33%), Postives = 123/249 (49.40%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVL-EPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L  KVAL+T    GIG   AR  ++ GA V+++  K    ++V + +              C V K +D E  V TAV  +G +DI+ +NA  V+    +I+D  +  +++ L IN+    L TK     M+  G GS++  +S+           Y  SK  LLGL K  A+EL    IRVNC++P ++ T  ++  L +  +    M   L+   L EPED A    +L S+++  ++G  +VV GG
Sbjct:   12 LANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQ---QNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAA-VNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSR-MLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 77/257 (29.96%), Postives = 131/257 (50.97%), Query Frame = 2
Query:   92 RLQGKVALITGGA-RGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVH----CDVTKEKDIENAVNTAVTQYGK-LDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAAR-VMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            RL+  +AL+TGGA  GIG   +   +  GA V   D+     +   + +             H     DV++       +      + +   ++ + AG T DE    +L   + +++R++++NL G FL T+ AA+ ++   GRGSII+ +S+ G +G      YASSK G++GL +  A ELGR GIR N V P  ++TP+ +   +   D +  M     G + +PED+A+   +L S++S  ++G ++ V GG
Sbjct:    6 RLRSALALVTGGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGSPGSEDGAPRGKHAAFQADVSQGPAARRLLEEVQACFSRPPSVVVSCAGITRDEF---LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKMPEKVKDKVTAMIP--LGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 257          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 72/255 (28.24%), Postives = 128/255 (50.20%), Query Frame = 2
Query:   89 RRLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDL-GESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLG-SDESKCVSGHNLVVDGGFAI 847
            ++++  V +ITG +RGIG+  A    K G KVL+   +     E V K I               DV+K  D++  + TA+ ++G +D++ NNAG   +    ++   Q++++ ++++NL G FL T+ A ++M    RG II+ +SV G+IG      YA++K G++   K  A E     I VN V P  +++ +  +  +  +  + G      G   + E++A    +L  S  +  ++G    +DGG AI
Sbjct:   72 QKVESPVVVITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGGQAITFGG---DVSKATDVDAMMKTALDKWGTIDVVVNNAGITRDTL--LIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGEDMEKKILGTIP--LGRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGGIAI 319          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 82/251 (32.67%), Postives = 125/251 (49.80%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVL-EPEDIAEAALYLGSDESKCVSGHNLVVDGGFA 844
            L+ KVAL+T    GIG   AR  ++ GA V+++  K    E+V + +              C V K +D E  V  AV  +G +DI+ +NA  V+    NI+D  +  +++IL +N+    L TK     M+  G GS++  +SV           Y  SK  LLGL KN AVEL    IRVNC++P ++ T  ++  L +       M  +L+   L  PED A    +L S+++  ++G  +VV GG A
Sbjct:   12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQ---ENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAA-VNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQ-VLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTA 257          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
DHRS4_MOUSE1.330e-2230.35Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHB8_CANFA1.330e-2230.47Estradiol 17-beta-dehydrogenase 8 OS=Canis familia... [more]
LIMC_RHOER1.737e-2230.96(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
HCD2_BOVIN1.737e-2233.983-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taur... [more]
FABG_RICFE2.268e-2229.923-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_HAEIN2.268e-2231.203-oxoacyl-[acyl-carrier-protein] reductase OS=Haem... [more]
DHRS4_HUMAN2.268e-2231.33Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
DHB8_MOUSE2.268e-2229.96Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]
FABG_ARATH2.962e-2228.243-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHRS4_PIG2.962e-2232.67Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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