CK933906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: SSRP1_HUMAN (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRRQAEGTK 465 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS+ K + KAE + +YEK MK+Y + E +K Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSK 623
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMG3L_HUMAN (High mobility group protein B3-like-1 OS=Homo sapiens GN=HMGB3L1 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11 Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDY-NRRQAEGTK 465 DPN PKRP S FF+F EF + K +P S+ V K GE W ++++++K PYV K K K +YEKD+ DY ++ + +GTK Sbjct: 25 DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYVTKVAKLK-KYEKDVADYKSKGKLDGTK 105
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB2_MOUSE (High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11 Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKRP SAFF+F E R + K +HP S+ K GE W S DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: SSRP1_CHICK (FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11 Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYN 441 DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS+ K + KAE K +YEK MK+Y+ Sbjct: 541 DPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMG3M_HUMAN (Putative high mobility group protein B3-like protein OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11 Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDY-NRRQAEGTK 465 DPN PKRP S FF+F EF + K +P + V K GE WK++++++K PY+ +A K K +YEKD+ Y ++ +++G K Sbjct: 88 DPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAK 169
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11 Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRRQ 450 DPN PKR S F F + R+ KK+HP + VGK G+KW+ MS DK PY AKA+ K Y+ ++ DY Q Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHP-GIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQ 633
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.764e-11 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRRQAE 456 DPN PKR SA+ F E RE ++++P S VGK GE+WK+++E +APY AKA K YE + + YN Q E Sbjct: 20 DPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNADQEE 97
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGLX_HUMAN (High mobility group protein 1-like 10 OS=Homo sapiens GN=HMG1L10 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11 Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447 DPN PKR SAFF+F +R + K +HP S+ V K GE W + + DK PY KA K K +YEKD+ Y + Sbjct: 91 DPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HGB1A_HUMAN (Putative high mobility group protein B1-like 1 OS=Homo sapiens GN=HMGB1L1 PE=5 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11 Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRRQAEG 459 DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + + DK P KA K K +YEKD+ Y QA+G Sbjct: 91 DPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAY---QAKG 166 The following BLAST results are available for this feature:
BLAST of CK933906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933906 ID=CK933906; Name=CK933906; organism=Citrus sinensis; type=EST; length=847bpback to top |