CK933912

Overview
NameCK933912
Unique NameCK933912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:443..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933912 vs. ExPASy Swiss-Prot
Match: HUB1_DEBHA (Ubiquitin-like modifier HUB1 OS=Debaryomyces hansenii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   58 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 276
            MIEV+ NDRLGKK++VKC   DTIGDLKK+++ Q GT  +KI ++K Y +YKDHITL DYE+H+G   ELYYS
Sbjct:    1 MIEVLANDRLGKKIKVKCMPTDTIGDLKKIISLQIGTSYEKIVLKKGYQVYKDHITLDDYEVHNGFNFELYYS 73          
BLAST of CK933912 vs. ExPASy Swiss-Prot
Match: HUB1_CANGA (Ubiquitin-like modifier HUB1 OS=Candida glabrata GN=HUB1 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.866e-21
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   58 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 276
            MIEV++NDRLGKK+RVKC EDDT+GD KK+++ Q G +  KI +QK  ++ KDHITL DYE+HD   LELYYS
Sbjct:    1 MIEVLVNDRLGKKIRVKCLEDDTVGDFKKVLSVQLGMQPSKIVLQKGGSVLKDHITLYDYEVHDNTNLELYYS 73          
BLAST of CK933912 vs. ExPASy Swiss-Prot
Match: HUB1_YEAST (Ubiquitin-like modifier HUB1 OS=Saccharomyces cerevisiae GN=HUB1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.177e-20
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   58 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 273
            MIEVV+NDRLGKKVRVKC  +D++GD KK+++ Q GT+ +KI +QK  ++ KDHI+L+DYE+HD   LELYY
Sbjct:    1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 72          
BLAST of CK933912 vs. ExPASy Swiss-Prot
Match: HUB1_KLULA (Ubiquitin-like modifier HUB1 OS=Kluyveromyces lactis GN=HUB1 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.177e-20
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   58 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGT-RADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 273
            MIEV++NDRLGKKV VKC  +DT+GD KK+++ Q GT  A KI +QK  ++ KDHITL+DYE+HDG  LELYY
Sbjct:    1 MIEVLVNDRLGKKVNVKCLSEDTVGDFKKVLSVQLGTASASKIVLQKGGSVLKDHITLEDYEVHDGTNLELYY 73          
BLAST of CK933912 vs. ExPASy Swiss-Prot
Match: UBL5_DICDI (Ubiquitin-like protein 5 OS=Dictyostelium discoideum GN=ubl5 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   58 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKD--------------YEIHDGMGLELYYS 276
            MIEVV NDRLG KVRVK N DDTIGDLKK+++AQ G +A+KIR+QK Y+I+KD     +              YEIHDG GLELYY+
Sbjct:    1 MIEVVCNDRLGNKVRVKVNSDDTIGDLKKVLSAQIGIKAEKIRLQKSYSIFKDRNNNNNYNNYNNNNNNYYYYYEIHDGDGLELYYN 87          
BLAST of CK933912 vs. ExPASy Swiss-Prot
Match: HUB1_ASHGO (Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   58 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 273
            MIEV++NDRLGKK+RVKC   D++GDLKK++A Q GT   K+ + K     KDHI+L DYE+HDG  LELYY
Sbjct:    1 MIEVIVNDRLGKKLRVKCLSTDSVGDLKKVLAVQLGTAHGKVALHKGGVNLKDHISLDDYEVHDGTYLELYY 72          
The following BLAST results are available for this feature:
BLAST of CK933912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HUB1_DEBHA7.507e-2263.01Ubiquitin-like modifier HUB1 OS=Debaryomyces hanse... [more]
HUB1_CANGA4.866e-2163.01Ubiquitin-like modifier HUB1 OS=Candida glabrata G... [more]
HUB1_YEAST9.177e-2061.11Ubiquitin-like modifier HUB1 OS=Saccharomyces cere... [more]
HUB1_KLULA9.177e-2063.01Ubiquitin-like modifier HUB1 OS=Kluyveromyces lact... [more]
UBL5_DICDI4.554e-1957.47Ubiquitin-like protein 5 OS=Dictyostelium discoide... [more]
HUB1_ASHGO3.855e-1859.72Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_G11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933912 ID=CK933912; Name=CK933912; organism=Citrus sinensis; type=EST; length=585bp
GGGGAAACGAGAAAATCCCAAATCATTCGGCGGGGAAAATCAAAACAGGA
GACAAAGATGATTGAGGTGGTGCTGAACGACAGGCTCGGGAAGAAGGTGC
GCGTGAAGTGCAACGAAGACGACACCATAGGCGACTTGAAGAAGCTGGTG
GCGGCTCAGACCGGGACTCGAGCCGACAAGATTCGGATTCAGAAGTGGTA
CAACATCTACAAGGACCACATCACTCTCAAGGACTACGAGATTCACGACG
GCATGGGCCTTGAACTCTATTACAGCTAAATCCACCGTTAAATATATATG
CTGCTGCAAGCAGTCAATACTACTAGGAACCATATGCTATAATAAGCAAG
GGGTATTGGAAGATGCGGCAGGGCCAACTTTACTAATACTGTCTTGTAAG
AAAAAATTTGTGAAGACTCGTAAAAACTTATTTGTGGTTATGTAACATAT
CTGGGATCTGGACTTACTCTCCATTTTGAATGGTGTTTAGATCTTTATCA
AGGTATTGAGGTACCACATGCTTGTCAGTCCATTAGGCTGATAGAATTTT
GTGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top