CK933918

Overview
NameCK933918
Unique NameCK933918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:1..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 87/199 (43.72%), Postives = 109/199 (54.77%), Query Frame = 3
Query:  174 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            + GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I  ++ + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   57 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 249          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 98/262 (37.40%), Postives = 132/262 (50.38%), Query Frame = 3
Query:   27 MASNTLMSCGIATTAFPSVLSSSKSKFF----------TAVSLPAAANATSKYA----MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            MAS+T+    +++TAF     +  S  F           A + PAA++ +  Y     +    + GEP P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I   + + +  +E  R          DP    YPGG FDPLG + DP+ F + KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:    1 MASSTM---ALSSTAFAGKAVNVPSSLFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 100/263 (38.02%), Postives = 127/263 (48.29%), Query Frame = 3
Query:   15 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            SS  ++S TL    + T+A PS      ++F    S       T K A S     G  R           P YL G  PGD+G+D   L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HL+DP +NN
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSA-----TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.560e-31
Identity = 85/193 (44.04%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVK IKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 82/193 (42.49%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  183 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            E  P YL G  PGD+G+D   L   PE   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  +   + + +  +E  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   63 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHVADPVANN 253          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 84/193 (43.52%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  183 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            E  P YL G  PGD+G+D   L   PE   R +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I  ++ + + FVE  R       +   K YPGGAFDPLG + DP  F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 84/193 (43.52%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  183 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            E  P YL G  PGD+G+D   L   PE   R +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I  ++ + + FVE  R       +   K YPGGAFDPLG + DP  F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   61 EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 83/193 (43.01%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE         G   W++A       GG   YLGNP  V   ++  I   + L +  VE  R       +  DP    YPGG+FDPLG ++DP+ F E KVKE KNGRLA+ +  GF + Q+   G GPLENLA HL DP +NN
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFI-QAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 85/193 (44.04%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I   + + + FVE  R          DP    YPGGAFDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHLADPVANN 253          
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.778e-31
Identity = 85/193 (44.04%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725
            P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE         G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
The following BLAST results are available for this feature:
BLAST of CK933918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB22_ORYSJ2.047e-3143.72Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE4.560e-3137.40Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA4.560e-3138.02Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC4.560e-3144.04Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_TOBAC5.955e-3142.49Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ5.955e-3143.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.955e-3143.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP5.955e-3143.01Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_GOSHI5.955e-3144.04Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_PETSP7.778e-3144.04Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933918 ID=CK933918; Name=CK933918; organism=Citrus sinensis; type=EST; length=855bp
GGGACCCCTCACACAGCTCTCCCAAAATGGCTTCCAACACTCTGATGAGC
TGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCATCTTCTAAATC
CAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAATGCAACCTCGA
AATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCCGGCCGCCTTAT
CTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCACTTCGGCTTGG
CGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACT
GCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTG
GGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGG
ACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAA
TTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGC
ATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCC
CTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGG
AGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTG
CAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCA
CTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAG
GGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACTGTAAA
ATTCCCTGGTAAAAAGAGCTTTTAATGAAAAAAAAAAAAAAAAAAAAANA
AAAAA
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