CK933918
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.123e-29 Identity = 79/191 (41.36%), Postives = 103/191 (53.93%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 P YL G PGD+G+D L PE ++Y+E E+IH RWA+L GIL PE L G W +A GG YLG+P + + L ++ + + +E R + YPG +FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP++NLA HLADP NN Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGG-LDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFV-QAIVTGKGPIQNLADHLADPGTNN 244
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.467e-29 Identity = 94/252 (37.30%), Postives = 123/252 (48.81%), Query Frame = 3 Query: 15 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 SS K +N L+ G A + + K A S+ + + + GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L G W +A GG YLG+P + ++ I + + + +E R DP YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENLA HLADP +NN Sbjct: 22 SSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFS-GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.467e-29 Identity = 83/196 (42.35%), Postives = 102/196 (52.04%), Query Frame = 3 Query: 183 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 E P YL G PGD+G+D L PE R +E E+IH RWAML G PE L G W +A GG YLGNP + ++ I + + + FVE R DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G GP++NL H+ADP NN Sbjct: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGG-LDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIQNLYDHVADPVANN 253
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.502e-29 Identity = 80/192 (41.67%), Postives = 101/192 (52.60%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSME-----KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 722 P YL G PGD+G+D L P+ RY+E ELIH RWA+L GIL PE L G W +A GG YLGN + ++ L ++ + + E R+ D YPGG FDPLG + DP F E KVKEIKNGRLA+ + +GF V Q+ G GP++NL HLADP N Sbjct: 51 PEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGG-LNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFV-QAIVTGKGPVQNLTDHLADPTVN 240
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.502e-29 Identity = 84/197 (42.64%), Postives = 106/197 (53.81%), Query Frame = 3 Query: 180 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L G +W +A GG YLGN + ++ I + + + VE R DP YPGG+FDPL + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA+P +NN Sbjct: 43 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAEPVNNN 233
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.268e-29 Identity = 85/193 (44.04%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 P YL+G GD+G+D L PE R +E E+IH RWAML G L PE L G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HLADP NN Sbjct: 69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLNDHLADPVANN 256
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 4.268e-29 Identity = 93/252 (36.90%), Postives = 123/252 (48.81%), Query Frame = 3 Query: 15 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 SS K +N L+ G A + + + A S+ + + M GEP P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L G W +A GG YLG+P + ++ I + + + +E R DP YPGG FDPLG + DP F + KVKEIKNGRLA+ + GF V Q+ G GP+ENLA HLADP +NN Sbjct: 22 SSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDR-VMYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 9.508e-29 Identity = 100/258 (38.76%), Postives = 127/258 (49.22%), Query Frame = 3 Query: 30 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADW-----------MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 A+ L S A A ++ SSS+ + VS+ A AT K + + W GE P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L G W + GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + D + F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 4 ATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTA-ATKK--VGSPWYGPDRVKYLGPFSGES-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGG-LQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 9.508e-29 Identity = 81/193 (41.97%), Postives = 102/193 (52.85%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 P YL G PGD+G+D L P + ++ E+IHCRW ML G + PE G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + DP+ F E +VKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.242e-28 Identity = 82/193 (42.49%), Postives = 103/193 (53.37%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG ++ P+ F E KVKE+KNGRLA+ + GF V + G GPLENLA HLADP +NN Sbjct: 29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV-PAIVTGKGPLENLADHLADPVNNN 216 The following BLAST results are available for this feature:
BLAST of CK933918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933918 ID=CK933918; Name=CK933918; organism=Citrus sinensis; type=EST; length=855bpback to top |