CK933918
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.275e-21 Identity = 72/191 (37.70%), Postives = 90/191 (47.12%), Query Frame = 3 Query: 171 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 743 W P P +L+G GD GFDP L P+ ER + +E+ H R AMLAV G LVP+ LG G W +A + A + L + + F + E YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA HL P NI D I+ Sbjct: 5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQPLQRNIADSIM 172 HSP 2 Score: 92.4337 bits (228), Expect = 3.389e-18 Identity = 69/194 (35.57%), Postives = 90/194 (46.39%), Query Frame = 3 Query: 171 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAF---VEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 728 W P P L G P D GFDPL L P+ R + +E+ H R AML G +VPE LG G W +A + +V G L + F+++A E+ R + +K + YPG FDPL + D + E+KNGRLAL A G Q A G PL NL+ HLA+P NI Sbjct: 190 WFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAGD--SVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLA-TGESPLANLSAHLANPIGANI 355 HSP 3 Score: 90.1225 bits (222), Expect = 1.682e-17 Identity = 72/204 (35.29%), Postives = 90/204 (44.12%), Query Frame = 3 Query: 126 PAAANATSKYAMSAD---------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRS------MEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 692 P AN T+ AM A W P P YL G A GD GFDP L P ER + +E+ HCR +MLA+ G LVPE LG G W Q W V + V+ +A +E+ R +++ + YPG FDPL + E K EIKNGRLA+ G V QS G P+ NL Sbjct: 350 PIGANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWFQI--WDKVDFNR---------------FAVVALQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTT-----EYTKEAEIKNGRLAMNGMFGLEV-QSHVTGKSPINNL 528
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.587e-21 Identity = 85/244 (34.84%), Postives = 115/244 (47.13%), Query Frame = 3 Query: 36 NTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYA--MSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-----GLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSME---KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 N + S I T F + ++KSK ++ + KY S +W P YL G PGD+G+D L PE + +E E+IH R AM A G + PE L G G W +A GG YLGNP V ++ I + + + VE R + YP G+FD LG ++D + F E KVKE+KNGRLA+ + GF V Q+ LENLA HL +NN Sbjct: 27 NPISSTLIVTAGFTMLKHAAKSKVSSST-----CDRRVKYLGPFSGEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFV-QAIVSRKDRLENLADHLGWTVNNN 256
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.730e-20 Identity = 83/232 (35.78%), Postives = 110/232 (47.41%), Query Frame = 3 Query: 90 SSKSKFFTAVSLPAAANATSKY--------AMSADWMPGEPR------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 644 SS+S F + A + TS+ A W+P P +LDGS PGDFGFDPL LG+ P L+ Y+E+ELIH RWAMLAV GI V +A W +A A PG A P +GTL L + L + +VE +R ++ DP+ + YPGG FDPL ++ D K E K+ EIK+ RLA+LA + F Sbjct: 25 SSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEA---GADPGAVA-----PFSFGTL---LGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.177e-20 Identity = 75/206 (36.41%), Postives = 96/206 (46.60%), Query Frame = 3 Query: 126 PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 728 P A AT+ + W PG P +L G P D GFDPL + P R + SE+ H R +MLA+ G +VPE LG G W + +GN V L IL+ A E+ R + +K + YPG FDPL + D Y +EIKNGRLA+ +G Q A G PL NLA H A+P NI Sbjct: 148 PVAMFATTGHKDGV-WFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGKGAWFE--------------VGNSVDGIKLGFILM---AIAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTD------YTKREIKNGRLAMTGLLGLTFQYLA-TGESPLANLAAHFANPVGANI 326
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.165e-18 Identity = 71/184 (38.59%), Postives = 94/184 (51.09%), Query Frame = 3 Query: 192 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 644 P +LDGS PGD+GFDPL LG+ P L+ Y+E+ELIH RWAM AV GI V +A W +A A PG A P +GTL L + + + +VE +R ++ DP+ + YPGG FDPL + D +K E KV EIK+ RLA+LA + F Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGTL---LGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.595e-18 Identity = 82/251 (32.67%), Postives = 115/251 (45.82%), Query Frame = 3 Query: 57 IATTAFPSVLSSSKSKFFTA---------VSLPAAANATSKYAMSA-------DWMPGEPR------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME----------------KDPE-------KKKYPGGA-FDPLG---------FSKDPQKFEEYKVKEIKNGRLALLAFVGF 644 + TT+ +VL+ S F T + A ++ ++A W+P P +LDGS PGDFGFDPL LG+ P L+ Y+E+ELIH RWAM AV GI V +A W +A A PG A P +G+L L + L + +VE +R ++ K E ++ YPGG FDPL + D +K E K+ EIK+ RLA+LA + F Sbjct: 1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 528 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 528 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.869e-17 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 528 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
BLAST of CK933918 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.894e-17 Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 528 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 725 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA H+ADP +NN Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255 The following BLAST results are available for this feature:
BLAST of CK933918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933918 ID=CK933918; Name=CK933918; organism=Citrus sinensis; type=EST; length=855bpback to top |