CK933935

Overview
NameCK933935
Unique NameCK933935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933935_ssr72 microsatellite CK933935_ssr72:72..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933935_ssr5 microsatellite CK933935_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1642 contig Csv1_Contig1642:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y   A+ +LP  +F Y   GA  + TL+ N    S +  R R+L  V ++D+STT+L  ++SMP+ +AP  +  M    GE          G   TLS+ S  S+EEV S      +FQLY
Sbjct:    3 ISSSSDYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEVQSQVGKPIWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R R+L ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSEVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I++  +Y A AK +LP  +F Y   GA  ++TL+ N    S I  R ++L +V+ + + T + G K++MP+ +AP  +  M    GE          G   TLS+ S   +EEV S      +FQLY
Sbjct:    3 ISSPNDYRAAAKSRLPPFLFHYVDGGAYAEYTLRRNVEDLSHIALRQQVLRNVADLSLETELFGQKLTMPVALAPVGLTGMLARRGEVQAAKAAQAKGVPFTLSTVSVCPIEEVQSQCAKPIWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
[Close]
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 3 
Query:  411 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT+   K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLY
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLY 129
The following BLAST results are available for this feature:
BLAST of CK933935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
LLDD_XANP21.104e-1234.65L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_CITK81.104e-1233.86L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]
LLDD_AZOC51.104e-1233.07L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_SHISS1.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL1.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF81.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS1.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS1.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB31.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_ECOSM1.883e-1233.86L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_E01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933935 ID=CK933935; Name=CK933935; organism=Citrus sinensis; type=EST; length=792bp
GGGGATTTATTTATTTATTTAAAAATTTGATAACAAGAGGGATAATGATA
ATGAAGAAGAAAAATTATGAAACACACACACCATATGCAGATGATAGCCA
CCCATTTTCCCTGATAAGATTTGTTCTCAATTTCTCACCTCCAAATGCTC
ATCCACTCAACTTGCATTTTCTTGTTTAATTTTTTTTTCTTGTCTTATAA
TTCAATCAGGCCCCTTGTTTTGTCTCCATGAAAACTTATATCTATTTTAT
TTTCTCTTTGCTTTCTATTTCTTAAATCTCCCTCTATAACTCAGTCTTTG
TTCATCATCGTCTTCTCTCCACTGGTTTCTCTGAATGCACTTTGCTGCAC
AGTCTTTGTAAACCTTAGATTAATTTAAGTAGAAAACAGTCAACTGTCAA
GATGGGGGAGATCACAAATGTGATGGAGTATGAGGCCATTGCCAAGGAAA
AGTTGCCAAAGATGGTGTTTGATTACTATGCTTCAGGTGCAGAGGACCAG
TGGACTTTGCAAGAGAACAGGAATGCTTTCTCAAGAATCCTGTTTCGACC
TCGCATTCTGATTGATGTAAGCAAAATAGACATGAGTACCACTGTCTTGG
GCTTCAAGATATCGATGCCAATCATGATTGCCCCAACAGCCATGCAGAAG
ATGGCTCATCCTGAAGGGGAGTATGCTACAGCTAGAGCTGCATCGGCTGC
TGGAACGATTATGACATTGTCTTCGTGGTCTACTTCTAGCGTTGAAGAGG
TTGCTTCAACAGGACCTGGCATCCGCTTTTTCCAGCTCTATG
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